BAC Information

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BAC

Clone NameB6Ng01-325J24
Chromosome19 (Build37)
Map Location 27,084,628 - 27,222,428
singlet/doubletdoublet
Overlap geneLOC100042576
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneVldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325J24.bB6Ng01-325J24.g
ACCGA113637GA113638
length1,1261,130
definitionB6Ng01-325J24.b B6Ng01-325J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,084,628 - 27,085,758)(27,221,297 - 27,222,428)
sequence
gaattcagctcagtgagagcaacttggtgtaatggggggttgggaataat
cagctgacttctctatggggataattctacctaatcttatttctgtgttc
tgtaatttattttctctctgatgatggttttcaatcttgactatcttcta
tctgatcttacagatattgtgtctactctgccaggattttacttcgtctg
ctcgagtcttttgaatgtctgctttgttactctttattgttcttgttccc
tatcggtatttttaaatcttacgatttgaacagaataagcatggttattt
atatttggtgtcttaggtcttttgttgtctgttgttgctcctcttcttga
tcacacagcaggatttcttgggtgcttgaattttatgtctgttggctaat
ttctatggaaagattatttttaggaattcttggaggactgtgatagagaa
gcggtctctggagagcattttctctttctctgccgtgaacttgtgagtgt
gaccggtttttgattctttgattttaaaagcataggatagtcttttatat
ttcttcataatttaatctgtgctgcaaaacacactggggtgtattacctc
ttggctgatgtgaaagcaaagtcattgggggaatggtctgcctttagaaa
agattatctagccgtgggatagtggaccctgcaaaggaaacttggtaagg
ttgagcagattcagagtccccagcacccagacacccacttgaaaatgcta
ggctgctccctgctcccttccaggttcctggctcagaacatgtgccacac
tccccacacagaaaatgtgacccgtggatcagagcagagttctccatgct
aatgaggtatctagaagaaccccgagggttcagacaataagctttctcct
ctcagatcttcctccttgcaaaggtatttaatctctagtcaccctgagga
ggtggtatgcacccatttcccacattgaacaatcactagccgttggaaca
ggacttgtatctttcgtcaaaaaagccattagtaaggagcatgaagaggc
tttcacttacgaagccagctgctaggccctcctggtgctcccagaataac
gctggtaagctagggacattcgctgg

gaattctttaaaatggatttggatttcagaacactggtaaagcagtactc
aggggctttgtgcattcttagttgtgaaacaataggaagattttttttcc
ttgataaagaaagaaaaataataaaatatctgaacttaccacagataaca
ctaaagccaagagcccagcagtggaaatagggtacgtgagctatgcacat
tgtttttcctacttctgcagttctgtcttcctgctccaaccatcagcaca
gcccatgtgttcttccatctcatggtgtcctgagcttgcctcctcccacc
ggaacacgcggccatctcttcttatgagaactcccgcagtgaccatattt
gggagcctgttgatagcgcccttgctgtccatgattcagctcccgacgag
gccggtgaccttctcaacttcctagctgtcccgtcaccgcttccaagtga
aacttttaatgactgtgtttatttttcttcagtcaagtcccacacctgtc
cggcctcatcctgttctctacttcctccctgcccatgccctgatcggggt
tcatcttaggcccgtgtcttgttggcttcctttcccctgcgcctctgaca
caggttatttcttctcctggaatatcttttttctttttttctgtcatcca
gttttgtttggcctctttcactaggattcctgctaagataggactatgcg
tccagttgtttcggtcacacagcagcagacaatgtatgtgattatgtaac
ggtgtcagcaagtttcactgagacaataaacacatggaaaggtacaccaa
gaaaaaagtgagcagaacaaagctgtcttcaacttagctttcgttttcaa
acactgaatgcacaattccatttttacagtttcttttagaccagtggttc
tcagcctttgggtcatgacccctttgggggctgaataaccctttcacagg
ggtcgcctaagacaatgggaaaacacggatatttacattatgagttgcaa
cagtagcatatacagtgatggaatagcaatgatgaaacatgctgggaggt
ccactacaggcatgaggaactgcattaaaggacccagcttagacacgtgg
agaaccactgttgttatgactccggagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27084628_27085758
seq2: B6Ng01-325J24.b_46_1171

seq1  GAATTCAGCTCAGTGAGAGCAACTTGGTGTAATGGGGGGTTGGGAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGTGAGAGCAACTTGGTGTAATGGGGGGTTGGGAATAAT  50

seq1  CAGCTGACTTCTCTATGGGGATAATTCTACCTAATCTTATTTCTGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACTTCTCTATGGGGATAATTCTACCTAATCTTATTTCTGTGTTC  100

seq1  TGTAATTTATTTTCTCTCTGATGATGGTTTTCAATCTTGACTATCTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTATTTTCTCTCTGATGATGGTTTTCAATCTTGACTATCTTCTA  150

seq1  TCTGATCTTACAGATATTGTGTCTACTCTGCCAGGATTTTACTTCGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTTACAGATATTGTGTCTACTCTGCCAGGATTTTACTTCGTCTG  200

seq1  CTCGAGTCTTTTGAATGTCTGCTTTGTTACTCTTTATTGTTCTTGTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTCTTTTGAATGTCTGCTTTGTTACTCTTTATTGTTCTTGTTCCC  250

seq1  TATCGGTATTTTTAAATCTTACGATTTGAACAGAATAAGCATGGTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGTATTTTTAAATCTTACGATTTGAACAGAATAAGCATGGTTATTT  300

seq1  ATATTTGGTGTCTTAGGTCTTTTGTTGTCTGTTGTTGCTCCTCTTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGTGTCTTAGGTCTTTTGTTGTCTGTTGTTGCTCCTCTTCTTGA  350

seq1  TCACACAGCAGGATTTCTTGGGTGCTTGAATTTTATGTCTGTTGGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGCAGGATTTCTTGGGTGCTTGAATTTTATGTCTGTTGGCTAAT  400

seq1  TTCTATGGAAAGATTATTTTTAGGAATTCTTGGAGGACTGTGATAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGAAAGATTATTTTTAGGAATTCTTGGAGGACTGTGATAGAGAA  450

seq1  GCGGTCTCTGGAGAGCATTTTCTCTTTCTCTGCCGTGAACTTGTGAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCTCTGGAGAGCATTTTCTCTTTCTCTGCCGTGAACTTGTGAGTGT  500

seq1  GACCGGTTTTTGATTCTTTGATTTTAAAAGCATAGGATAGTCTTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGTTTTTGATTCTTTGATTTTAAAAGCATAGGATAGTCTTTTATAT  550

seq1  TTCTTCATAATTTAATCTGTGCTGCAAAACACACTGGGGTGTATTACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATAATTTAATCTGTGCTGCAAAACACACTGGGGTGTATTACCTC  600

seq1  TTGGCTGATGTGAAAGCAAAGTCATTGGGGGAATGGTCTGCCTTTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGATGTGAAAGCAAAGTCATTGGGGGAATGGTCTGCCTTTAGAAA  650

seq1  AGATTATCTAGCCGTGGGATAGTGGACCCTGCAAAGGAAACTTGGTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCTAGCCGTGGGATAGTGGACCCTGCAAAGGAAACTTGGTAAGG  700

seq1  TTGAGCAGATTCAGAGTCCCCAGCACCCAGACACCCACTTG-AAATGCTA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGAGCAGATTCAGAGTCCCCAGCACCCAGACACCCACTTGAAAATGCTA  750

seq1  GGCTGCTCCCTGCTCCCTTCCAGGTTCCTGGCTCAGAACATGTGCCACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCCCTGCTCCCTTCCAGGTTCCTGGCTCAGAACATGTGCCACAC  800

seq1  TCCCCACACAGAAAATGTGACCCGTGGATCAGAGCAGAGTTCTCCATGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACACAGAAAATGTGACCCGTGGATCAGAGCAGAGTTCTCCATGCT  850

seq1  AATGAGGTATCTAGAAGAACCCCGAGGGTTCAGACAATAAGC-TTCTCCT  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATGAGGTATCTAGAAGAACCCCGAGGGTTCAGACAATAAGCTTTCTCCT  900

seq1  CTCAGATCTTCCTCCTTGCAAAAGGTATTTAATCTCTAGTCCACCCTGAG  948
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CTCAGATCTTCCTCCTTGC-AAAGGTATTTAATCTCTAGT-CACCCTGAG  948

seq1  GAGGTGGTATGCACCCATTTCCCACAATGAACAATCACTAAGCCGTTTGG  998
      |||||||||||||||||||||||||| |||||||||||| ||||| ||||
seq2  GAGGTGGTATGCACCCATTTCCCACATTGAACAATCACT-AGCCG-TTGG  996

seq1  AACCAAGGAC-TGTATCTTTCGTCAAAAAAGCCA-TAGTAAGGAGCATGA  1046
      |||  ||||| ||||||||||||||||||||||| |||||||||||||||
seq2  AAC--AGGACTTGTATCTTTCGTCAAAAAAGCCATTAGTAAGGAGCATGA  1044

seq1  AGAAGGCTTTCACCTACAGAGCCACGCTGCCTAAGCCCTCCCTGTGCTCC  1096
      || |||||||||| |||  ||||| |||| ||| |||||||  |||||||
seq2  AG-AGGCTTTCACTTACGAAGCCA-GCTG-CTAGGCCCTCCTGGTGCTCC  1091

seq1  CAGATAACCGCTGGTAAGCTAGGGACATTCGCTGG  1131
      ||||  | |||||||||||||||||||||||||||
seq2  CAGAATAACGCTGGTAAGCTAGGGACATTCGCTGG  1126


seq1: chr19_27221297_27222428
seq2: B6Ng01-325J24.g_67_1196 (reverse)

seq1  TAGCTCGCGAGTCAT-ACAACAGTGGTTCTCAACGTGTCTAAAGCTGTGG  49
      ||||||  ||||||| ||||||||||||||| |||||||| |||||| ||
seq2  TAGCTCCGGAGTCATAACAACAGTGGTTCTCCACGTGTCT-AAGCTG-GG  48

seq1  TTCTTTAATGCAGTTCCTCATG-CTGTAGT-GACCTCCCAAGCATGTTTC  97
      | |||||||||||||||||||| ||||||| |||||||| ||||||||||
seq2  TCCTTTAATGCAGTTCCTCATGCCTGTAGTGGACCTCCC-AGCATGTTTC  97

seq1  ATCATTGCTATTCCATCACTGTAATATTGCTACTGTTGCAACTCATAATG  147
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  ATCATTGCTATTCCATCACTGT-ATA-TGCTACTGTTGCAACTCATAATG  145

seq1  TAAATATCCGTGTTTTCCCATTGTCTTAGGCGACCCCTGTGAAAGGGTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCCGTGTTTTCCCATTGTCTTAGGCGACCCCTGTGAAAGGGTTA  195

seq1  TTCAGCCCCCAAAGGGGTCATGACCCAAAGGCTGAGAACCACTGGTCTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCCCAAAGGGGTCATGACCCAAAGGCTGAGAACCACTGGTCTAA  245

seq1  AAGAAACTGTAAAAATGGAATTGTGCATTCAGTGTTTGAAAACGAAAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGTAAAAATGGAATTGTGCATTCAGTGTTTGAAAACGAAAGCT  295

seq1  AAGTTGAAGACAGCTTTGTTCTGCTCACTTTTTTCTTGGTGTACCTTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAGACAGCTTTGTTCTGCTCACTTTTTTCTTGGTGTACCTTTCC  345

seq1  ATGTGTTTATTGTCTCAGTGAAACTTGCTGACACCGTTACATAATCACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTATTGTCTCAGTGAAACTTGCTGACACCGTTACATAATCACAT  395

seq1  ACATTGTCTGCTGCTGTGTGACCGAAACAACTGGACGCATAGTCCTATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCTGCTGCTGTGTGACCGAAACAACTGGACGCATAGTCCTATCT  445

seq1  TAGCAGGAATCCTAGTGAAAGAGGCCAAACAAAACTGGATGACAGAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAATCCTAGTGAAAGAGGCCAAACAAAACTGGATGACAGAAAAA  495

seq1  AAGAAAAAAGATATTCCAGGAGAAGAAATAACCTGTGTCAGAGGCGCAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAGATATTCCAGGAGAAGAAATAACCTGTGTCAGAGGCGCAGG  545

seq1  GGAAAGGAAGCCAACAAGACACGGGCCTAAGATGAACCCCGATCAGGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAGCCAACAAGACACGGGCCTAAGATGAACCCCGATCAGGGCA  595

seq1  TGGGCAGGGAGGAAGTAGAGAACAGGATGAGGCCGGACAGGTGTGGGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGGAGGAAGTAGAGAACAGGATGAGGCCGGACAGGTGTGGGACT  645

seq1  TGACTGAAGAAAAATAAACACAGTCATTAAAAGTTTCACTTGGAAGCGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAGAAAAATAAACACAGTCATTAAAAGTTTCACTTGGAAGCGGT  695

seq1  GACGGGACAGCTAGGAAGTTGAGAAGGTCACCGGCCTCGTCGGGAGCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGACAGCTAGGAAGTTGAGAAGGTCACCGGCCTCGTCGGGAGCTGA  745

seq1  ATCATGGACAGCAAGGGCGCTATCAACAGGCTCCCAAATATGGTCACTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGACAGCAAGGGCGCTATCAACAGGCTCCCAAATATGGTCACTGC  795

seq1  GGGAGTTCTCATAAGAAGAGATGGCCGCGTGTTCCGGTGGGAGGAGGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCTCATAAGAAGAGATGGCCGCGTGTTCCGGTGGGAGGAGGCAA  845

seq1  GCTCAGGACACCATGAGATGGAAGAACACATGGGCTGTGCTGATGGTTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGACACCATGAGATGGAAGAACACATGGGCTGTGCTGATGGTTGG  895

seq1  AGCAGGAAGACAGAACTGCAGAAGTAGGAAAAACAATGTGCATAGCTCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGACAGAACTGCAGAAGTAGGAAAAACAATGTGCATAGCTCAC  945

seq1  GTACCCTATTTCCACTGCTGGGCTCTTGGCTTTAGTGTTATCTGTGGTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTATTTCCACTGCTGGGCTCTTGGCTTTAGTGTTATCTGTGGTAA  995

seq1  GTTCAGATATTTTATTATTTTTCTTTCTTTATCAAGGAAAAAAAATCTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATATTTTATTATTTTTCTTTCTTTATCAAGGAAAAAAAATCTTC  1045

seq1  CTATTGTTTCACAACTAAGAATGCACAAAGCCCCTGAGTACTGCTTTACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTTCACAACTAAGAATGCACAAAGCCCCTGAGTACTGCTTTACC  1095

seq1  AGTGTTCTGAAATCCAAATCCATTTTAAAGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGAAATCCAAATCCATTTTAAAGAATTC  1130


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