BAC Information

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BAC

Clone NameB6Ng01-326E13
Chromosome19 (Build37)
Map Location 16,067,496 - 16,248,327
singlet/doubletdoublet
Overlap geneLOC100042048, Gnaq, E030024N20Rik
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78
Downstream geneLOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326E13.bB6Ng01-326E13.g
ACCGA114130GA114131
length1,2801,106
definitionB6Ng01-326E13.b B6Ng01-326E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,247,013 - 16,248,327)(16,067,496 - 16,068,609)
sequence
gaattcacctgctacaacgaagacgcaagtctttctcatgtgttcatttt
cactgccaagccatccacagaagaagccctgtaagaacaggacactctca
aagtcagtgctggtctgaatgatcccacgagacacagcgagggtggccgt
ggcagttctaagagcatcaaagacaactcctggctgtggagtttatcctg
gaaaactgctctgcttgggatcttaaactttaaattcttattagcaaaat
atattttgcctttataaaactagagtatgttgatttttaaaagtaaactt
gaaggtttggtacgggtggtcagtagtagagcgcctgcatttgataggta
catttcatattttaatatctggctcttgcctatcgtttaacaaacatccg
acactcctcactatttgctaacagagccacctcctcaggacaccccacct
tccccccacaccttcagtaatagcagcccgttttggcttagatgagatct
tcagctactaagggcattactaaaattgcagctcccctttggacacaatt
ctagatatgagattcaagcaaggtctcagtacagattcgagctggactca
agcactgggcagcctaggaggaaagtttccttgctcctagcagagaaaca
acagaagagagaggccatctgtctctgcttttacctgatctggctgtgga
gctggaacccctggggcaagcttgctaaggtgctaaaaggggcctgcaag
gagggagtggcacccaacaggaaggattagagccttctctgcctctggac
tgctcttcataggaaattaattttcttcttgctaaagcaaagtaaaactg
gatgtttccaccagcagccgctaaagcactggcaggtaaataactactaa
ttttttccaatcctatattacagctgaaattttactttcagaatggcaaa
catttatgcaaatgataatacacagacagcctttccctcttattatcctt
tggtcttagtacaatgtacattcccttttgaaatcacttttaacttcaat
aataactttgtaaagcagttttgagcatatcattcaccttatattgtact
caaagctgattaaacccagtcagatgctaagaatcaaaattcaggtgaca
cgcaatgctgccgtgatggtgaaaaagagaccctcctccattgttggtgg
aattgcagctttgcacccaatgatcgctgaagctcctagactgatataga
gctcactcagagatatccagcaataactct

gaattccaagccacccaaggttacacagtgagatactgtctcaatgcgcc
aaaaaccaaagtaatgacaagactcgcagaaatgcgttaccttatagtta
ttgaggtgaggaatccaaggtcaaggtgtcaccaatgctggctccttcta
gcagttctgaatagccttctgtacacttctttcctagtttgggttgtggc
tggcaatctctgggattctttggcccgtaggaccaatctacctttattgt
cctgtgacattcttctccacagtgtcccaaatttccctcatcgtataagg
tcactaagtattagatcaaagcttactctaatcacacctgtctgctgata
ttgctgtgtcctccatctctgatatgaccatcctaatcttcggaatacct
tagctctggagtcacggcaatgaaataagaagccagcattccaatagtta
ggtctatggtaatgaaagttgaactgttaacttccctcctaggagatggt
ggtcaccagaccctcaccagagattctgcctgccattccctcctgatgct
cggttgcctgtggtcttaggaagtgctaccaagtggaggaagtggttggt
cggtgacttgtgagtagaactcaagtgaggctgcttggacaaagtcatca
cctatgctgaggtgcgactctccagcagtgtggtggttttgaagtcatcc
atgctcccaggggccccagagaaacccactgcttcaacaaactggcctcg
gatgaaatttcttctttggtcagtctttggcctatctagggtgtttagaa
aaaacatttttttttttctggaatacatattacaatgcatcttaccttga
ctgtgccttcaaagacctgatttctaaagattagttcacaagtgccagcc
gttgaacttgaacatattttttttattagatattgtgcaacccacagcag
aaaaattgaatgattttctaacggtctgggtcaaaaagcaatccagtttc
tgctgctctttttcttgggggatgttcacatttggaaacacacaattttt
tagagcccagacacccaaggatcaattaagtttcagcttgggttgaatgt
aactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16247013_16248327
seq2: B6Ng01-326E13.b_53_1332 (reverse)

seq1  AGAGGTATTGCTGGAT-CCTCCG-GT-AGTACTATATCCAGTTTTCTGAG  47
      |||| |||||||||||  ||| | || ||  |||||| |||| |    ||
seq2  AGAGTTATTGCTGGATATCTCTGAGTGAGCTCTATAT-CAGTCT----AG  45

seq1  GAACCGCCAGACTGATTTCCATAGTGGTTGTACAAGCCTGCAATCCCACC  97
      ||   ||   |  |||   |||  |||  || |||  ||||||| |||||
seq2  GA---GCTTCAGCGAT---CAT--TGG--GTGCAAAGCTGCAATTCCACC  85

seq1  AACAATGAAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGC-T  146
      ||||||| ||||| ||  |||||| ||  ||| |||| |||||| ||| |
seq2  AACAATGGAGGAGGGT--CTCTTTTTCACCAT-CACGGCAGCAT-TGCGT  131

seq1  GTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGGTTTTTAAATCAGC  196
      ||||||||||||||   |||||||   |||||||||||||   |||||| 
seq2  GTCACCTGAATTTTGATTCTTAGC--ATCTGACTGGGTTT---AATCAG-  175

seq1  CTTTGAGGTAC-ATATAAGTTGAATGATTATTGCTTCAAAACTTGCCTTT  245
      |||||| |||| ||||||| ||||||||   ||| ||||||||   ||||
seq2  CTTTGA-GTACAATATAAGGTGAATGAT--ATGC-TCAAAACT--GCTTT  219

seq1  ACAAAGTTTATTTATGAAGTTAAAAGTGATTTTCAAAAGGGAATGTACAT  295
      |||||| |||||  ||||||||||||||| ||||||||||||||||||||
seq2  ACAAAG-TTATTATTGAAGTTAAAAGTGA-TTTCAAAAGGGAATGTACAT  267

seq1  TGTACTTAAGACCAAAGGAATAAATAAGAGGGGAAAGGCTGTCTGTGTAT  345
      ||||| |||||||||||||   ||||||| ||||||||||||||||||||
seq2  TGTAC-TAAGACCAAAGGA--TAATAAGA-GGGAAAGGCTGTCTGTGTAT  313

seq1  TATTCATTTGCATAAATGTTTTGCCATTCTTGAAAGTAAAATTTCAGCTG  395
      || ||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  TA-TCATTTGCATAAATG-TTTGCCATTC-TGAAAGTAAAATTTCAGCTG  360

seq1  TAATATAGGATTGGAAAAAATTAGTAGTTATTTACCTGCCAGTGCTTTAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGGATTGGAAAAAATTAGTAGTTATTTACCTGCCAGTGCTTTAG  410

seq1  CGGCTGCTGGTGGAAACATCCAGTTTTACTTTGCTTTAGCAAGAAGAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCTGGTGGAAACATCCAGTTTTACTTTGCTTTAGCAAGAAGAAAA  460

seq1  TTAATTTCCTATGAAGAGCAGTCCAGAGGCAGAGAAGGCTCTAATCCTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCCTATGAAGAGCAGTCCAGAGGCAGAGAAGGCTCTAATCCTTC  510

seq1  CTGTTGGGTGCCACTCCCTCCTTGCAGGCCCCTTTTAGCACCTTAGCAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGGTGCCACTCCCTCCTTGCAGGCCCCTTTTAGCACCTTAGCAAG  560

seq1  CTTGCCCCAGGGGTTCCAGCTCCACAGCCAGATCAGGTAAAAGCAGAGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCCAGGGGTTCCAGCTCCACAGCCAGATCAGGTAAAAGCAGAGAC  610

seq1  AGATGGCCTCTCTCTTCTGTTGTTTCTCTGCTAGGAGCAAGGAAACTTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTCTCTCTTCTGTTGTTTCTCTGCTAGGAGCAAGGAAACTTTC  660

seq1  CTCCTAGGCTGCCCAGTGCTTGAGTCCAGCTCGAATCTGTACTGAGACCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGCTGCCCAGTGCTTGAGTCCAGCTCGAATCTGTACTGAGACCT  710

seq1  TGCTTGAATCTCATATCTAGAATTGTGTCCAAAGGGGAGCTGCAATTTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAATCTCATATCTAGAATTGTGTCCAAAGGGGAGCTGCAATTTTA  760

seq1  GTAATGCCCTTAGTAGCTGAAGATCTCATCTAAGCCAAAACGGGCTGCTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCCCTTAGTAGCTGAAGATCTCATCTAAGCCAAAACGGGCTGCTA  810

seq1  TTACTGAAGGTGTGGGGGGAAGGTGGGGTGTCCTGAGGAGGTGGCTCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAGGTGTGGGGGGAAGGTGGGGTGTCCTGAGGAGGTGGCTCTGT  860

seq1  TAGCAAATAGTGAGGAGTGTCGGATGTTTGTTAAACGATAGGCAAGAGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATAGTGAGGAGTGTCGGATGTTTGTTAAACGATAGGCAAGAGCC  910

seq1  AGATATTAAAATATGAAATGTACCTATCAAATGCAGGCGCTCTACTACTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAAAATATGAAATGTACCTATCAAATGCAGGCGCTCTACTACTG  960

seq1  ACCACCCGTACCAAACCTTCAAGTTTACTTTTAAAAATCAACATACTCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCGTACCAAACCTTCAAGTTTACTTTTAAAAATCAACATACTCTA  1010

seq1  GTTTTATAAAGGCAAAATATATTTTGCTAATAAGAATTTAAAGTTTAAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAAAGGCAAAATATATTTTGCTAATAAGAATTTAAAGTTTAAGA  1060

seq1  TCCCAAGCAGAGCAGTTTTCCAGGATAAACTCCACAGCCAGGAGTTGTCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCAGAGCAGTTTTCCAGGATAAACTCCACAGCCAGGAGTTGTCT  1110

seq1  TTGATGCTCTTAGAACTGCCACGGCCACCCTCGCTGTGTCTCGTGGGATC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTCTTAGAACTGCCACGGCCACCCTCGCTGTGTCTCGTGGGATC  1160

seq1  ATTCAGACCAGCACTGACTTTGAGAGTGTCCTGTTCTTACAGGGCTTCTT  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGACCAGCACTGACTTTGAGAGTGTCCTGTTCTTACAGGGCTTCTT  1210

seq1  CTGTGGATGGCTTGGCAGTGAAAATGAACACATGAGAAAGACTTGCGTCT  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATGGCTTGGCAGTGAAAATGAACACATGAGAAAGACTTGCGTCT  1260

seq1  TCGTTGTAGCAGGTGAATTC  1315
      ||||||||||||||||||||
seq2  TCGTTGTAGCAGGTGAATTC  1280


seq1: chr19_16067496_16068609
seq2: B6Ng01-326E13.g_69_1174

seq1  GAATTCCAAGCCACCCAAGGTTACACAGTGAGATACTGTCTCAATGCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCACCCAAGGTTACACAGTGAGATACTGTCTCAATGCGCC  50

seq1  AAAAACCAAAGTAATGACAAGACTCGCAGAAATGCGTTACCTTATAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAGTAATGACAAGACTCGCAGAAATGCGTTACCTTATAGTTA  100

seq1  TTGAGGTGAGGAATCCAAGGTCAAGGTGTCACCAATGCTGGCTCCTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGAGGAATCCAAGGTCAAGGTGTCACCAATGCTGGCTCCTTCTA  150

seq1  GCAGTTCTGAATAGCCTTCTGTACACTTCTTTCCTAGTTTGGGTTGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTGAATAGCCTTCTGTACACTTCTTTCCTAGTTTGGGTTGTGGC  200

seq1  TGGCAATCTCTGGGATTCTTTGGCCCGTAGGACCAATCTACCTTTATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCTCTGGGATTCTTTGGCCCGTAGGACCAATCTACCTTTATTGT  250

seq1  CCTGTGACATTCTTCTCCACAGTGTCCCAAATTTCCCTCATCGTATAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACATTCTTCTCCACAGTGTCCCAAATTTCCCTCATCGTATAAGG  300

seq1  TCACTAAGTATTAGATCAAAGCTTACTCTAATCACACCTGTCTGCTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGTATTAGATCAAAGCTTACTCTAATCACACCTGTCTGCTGATA  350

seq1  TTGCTGTGTCCTCCATCTCTGATATGACCATCCTAATCTTCGGAATACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGTCCTCCATCTCTGATATGACCATCCTAATCTTCGGAATACCT  400

seq1  TAGCTCTGGAGTCACGGCAATGAAATAAGAAGCCAGCATTCCAATAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGGAGTCACGGCAATGAAATAAGAAGCCAGCATTCCAATAGTTA  450

seq1  GGTCTATGGTAATGAAAGTTGAACTGTTAACTTCCCTCCTAGGAGATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATGGTAATGAAAGTTGAACTGTTAACTTCCCTCCTAGGAGATGGT  500

seq1  GGTCACCAGACCCTCACCAGAGATTCTGCCTGCCATTCCCTCCTGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCAGACCCTCACCAGAGATTCTGCCTGCCATTCCCTCCTGATGCT  550

seq1  CGGTTGCCTGTGGTCTTAGGAAGTGCTACCAAGTGGAGGAAGTGGTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCCTGTGGTCTTAGGAAGTGCTACCAAGTGGAGGAAGTGGTTGGT  600

seq1  CGGTGACTTGTGAGTAGAACTCAAGTGAGGCTGCTTGGACAAAGTCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACTTGTGAGTAGAACTCAAGTGAGGCTGCTTGGACAAAGTCATCA  650

seq1  CCTATGCTGAGGTGCGACTCTCCAGCAGTGTGGTGGTTTTGAAGTCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTGAGGTGCGACTCTCCAGCAGTGTGGTGGTTTTGAAGTCATCC  700

seq1  ATGCTCCCAGGGGCCCCAGAGAAACCCACTGCTTCAACAAACTGGCCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCCAGGGGCCCCAGAGAAACCCACTGCTTCAACAAACTGGCCTCG  750

seq1  GATGAAATTTCTTCTTTGGTCAGTCTTTGGCCTATCTAGGGTGTTTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATTTCTTCTTTGGTCAGTCTTTGGCCTATCTAGGGTGTTTAGAA  800

seq1  AAAACA-TTTTTTTTTTCTGGAATACATATTACAATGCATCTTACCTTGA  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTTTTTTTTTCTGGAATACATATTACAATGCATCTTACCTTGA  850

seq1  CTGTGCCTTCAAAGACCTGATTTCTAAAGATTAGTTCACAAGTGCCAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTTCAAAGACCTGATTTCTAAAGATTAGTTCACAAGTGCCAGCC  900

seq1  GTTGAACTTGAACATA-TTTTTTTATTAGATATTGTGCAACCCACAGCAG  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGAACTTGAACATATTTTTTTTATTAGATATTGTGCAACCCACAGCAG  950

seq1  AAAAATTGAATGA-TTTCTAAGGGTCTGGTCAAAAAAGCAATCCAGTTTC  997
      ||||||||||||| ||||||| |||||||   ||||||||||||||||||
seq2  AAAAATTGAATGATTTTCTAACGGTCTGGGTCAAAAAGCAATCCAGTTTC  1000

seq1  TGCCTGCTCCTTTTTCTTGGGGGATGTTCACATTTGGAAACCAACCACCA  1047
      || ||||| ||||||||||||||||||||||||||||||||    ||| |
seq2  TG-CTGCT-CTTTTTCTTGGGGGATGTTCACATTTGGAAAC---ACACAA  1045

seq1  TTTTTTAGGAAGCCCAGGACACCCAAAGGGATCACATAAGTTTCAGCTGG  1097
      ||||||||  |||||| |||||||||  ||||||  |||||||||||| |
seq2  TTTTTTAG--AGCCCA-GACACCCAA--GGATCAATTAAGTTTCAGCTTG  1090

seq1  GGTTGGAGTGTAACTCA  1114
      |||| || |||||||||
seq2  GGTT-GAATGTAACTCA  1106


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