BAC Information

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BAC

Clone NameB6Ng01-327K09
Chromosome19 (Build37)
Map Location 24,044,549 - 24,134,601
singlet/doubletdoublet
Overlap geneGm967
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
Downstream gene1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327K09.bB6Ng01-327K09.g
ACCGA115139GA115140
length1,110874
definitionB6Ng01-327K09.b B6Ng01-327K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,133,566 - 24,134,601)(24,044,549 - 24,045,421)
sequence
gaattctctagaagagtggccaatgctcttaattgctgagccatctctca
aggaataataataaagagtagtatatattttaaaaaaaagataaaattca
tgactgatcgagaaaaaaaatagacgcccccctgtaatatgaaatgttag
gactaatgcagtaaaatattgtttatacaattgagaattgaaccaacacc
ttacatgcacaaggcaagctctcccactgcagtctcagtgctgcaactga
ggttgaaaagtaagggagtctgggtttgcggagaggattcagcagtaaag
agtatacattgctctttcagaggacccagattcactcatggctccagtgc
taggagatccaacaccctctctggcctctgtgggcaccacacatgtggca
tgcattcatacacttagataataaaataagcctttttaaagcataaaagt
aaaggaatcccaacactagcttcacaccaataaatctgacaacgaatgtg
gtcaagactgccatttccccaaaatcattctttgtgtttttctcagtggt
gagacctctaatttgtcattggcagtggctgcttgaataaagagggggct
ttctagcaccattgggggctagaaagatggctcaatggttaagagctttt
gctgctctttgagaagacctgggttcaagtcttagcacccacatggcaat
ctatataacaacagtctattattccagtcctggagtatctgatgccctct
tctgtttgaaggtgacacgtgcgcacacgtgaacacacacacacacacac
acacacacacacacacacacactgcatagacatgacgcaggcaaaacacc
catactgatgtctcttgtacatggcaatgcctacatgacgatgctgtaac
cagttggtatctgctctttgcttccccctccgtcctttcttcaatcagat
agatgggctatgggtgatgatgtctgcattggaaagtagctgtatacatt
tagatcgtgaggtgggaggcaccacgcagaggtaatagggcaacaagaag
aaaagaaacctgcatcctgacagcgtttagaagctgtctagcaatgccat
aatggctgcc
gaattcagaattcagaagccgaggtgatgatgggccaacctttgactaag
actgctaaattatacaaacatctatcctcctgctgcgtttcatcctcagt
ttgaacctaaagcgtctatcaacacaccaagacaaatctggggtcactgg
acccccttatcttccgaccatcccaatggacactaattgatttttctctg
tttttacatcactgcttgcttctgtagtcggtgggttgggatgatggctg
agcttggcctgtaggaacttctggagggtaaccagatttttgccagttag
gtccttcagcaaatgtctggttcttgtggtaaatgtaagcaggcaggcag
ctggacttcagagcctcctccctgaaacctcactaccaggcaggactctt
ggggcagtaagccttcagccagtcttcctaaagtgcaaaagctgggaaag
tcttcctctctggcctcagaaacccagatatagagcttgctggaacattt
tgaaggggcaacccctgtcctgatttatcctgcgccaagctcacaaagtg
agcgtcgtgttcttactcaactgaagcagggccaacaataactgtacaag
gctctaggcatccagatatcctgagtgacattcactttgctagtgaagac
ttacttcaaatatttctctgctcagtaatcaatgctgttatcattctgat
gtcacacttgaaatcctttgtctctacctctggaccgtggatccctgtgg
tgttttaatgaaaaacagcctgccctatatatactcagttaacctatgta
tatgcatgccacacttttaatactttggcatttgagaatatttacacaca
cggggcggggggggggcggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24133566_24134601
seq2: B6Ng01-327K09.b_115_1155 (reverse)

seq1  GGCAGCCCATATGGCATTGCTAGACAGCTTC-AAACGCTGTCAGGGATGC  49
      |||||||  |||||||||||||||||||||| ||||||||||| ||||||
seq2  GGCAGCCATTATGGCATTGCTAGACAGCTTCTAAACGCTGTCA-GGATGC  49

seq1  A-GTTTCTTTTC-TCTTGTTGCCCTATTACCCTCTGCGT-GTGCCTCCCA  96
      | |||||||||| |||||||||||||||| ||||||||| ||||||||||
seq2  AGGTTTCTTTTCTTCTTGTTGCCCTATTA-CCTCTGCGTGGTGCCTCCCA  98

seq1  CCTCACGATCT-AATGTATACAGCTAC-TTCCAATGCAGACATCATCA-C  143
      ||||||||||| ||||||||||||||| |||||||||||||||||||| |
seq2  CCTCACGATCTAAATGTATACAGCTACTTTCCAATGCAGACATCATCACC  148

seq1  CATAGCCCATCTATCTGATTGAAGAAAGGACGGAGGGGGAAGCAAAGAGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCCATCTATCTGATTGAAGAAAGGACGGAGGGGGAAGCAAAGAGC  198

seq1  AGATACCAACTGGTTACAGCATCGTCATGTAGGCATTGCCATGTACAAGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAACTGGTTACAGCATCGTCATGTAGGCATTGCCATGTACAAGA  248

seq1  GACATCAGTATGGGTGTTTTGCCTGCGTCATGTCTATGCAGTGTGTGTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGTATGGGTGTTTTGCCTGCGTCATGTCTATGCAGTGTGTGTGT  298

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCACGTGTGCGCACGTGTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCACGTGTGCGCACGTGTCA  348

seq1  CCTTCAAACAGAAGAGGGCATCAGATACTCCAGGACTGGAATAATAGACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAACAGAAGAGGGCATCAGATACTCCAGGACTGGAATAATAGACT  398

seq1  GTTGTTATATAGATTGCCATGTGGGTGCTAAGACTTGAACCCAGGTCTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATATAGATTGCCATGTGGGTGCTAAGACTTGAACCCAGGTCTTC  448

seq1  TCAAAGAGCAGCAAAAGCTCTTAACCATTGAGCCATCTTTCTAGCCCCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGCAGCAAAAGCTCTTAACCATTGAGCCATCTTTCTAGCCCCCA  498

seq1  ATGGTGCTAGAAAGCCCCCTCTTTATTCAAGCAGCCACTGCCAATGACAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTAGAAAGCCCCCTCTTTATTCAAGCAGCCACTGCCAATGACAA  548

seq1  ATTAGAGGTCTCACCACTGAGAAAAACACAAAGAATGATTTTGGGGAAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGTCTCACCACTGAGAAAAACACAAAGAATGATTTTGGGGAAAT  598

seq1  GGCAGTCTTGACCACATTCGTTGTCAGATTTATTGGTGTGAAGCTAGTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTTGACCACATTCGTTGTCAGATTTATTGGTGTGAAGCTAGTGT  648

seq1  TGGGATTCCTTTACTTTTATGCTTTAAAAAGGCTTATTTTATTATCTAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCCTTTACTTTTATGCTTTAAAAAGGCTTATTTTATTATCTAAG  698

seq1  TGTATGAATGCATGCCACATGTGTGGTGCCCACAGAGGCCAGAGAGGGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAATGCATGCCACATGTGTGGTGCCCACAGAGGCCAGAGAGGGTG  748

seq1  TTGGATCTCCTAGCACTGGAGCCATGAGTGAATCTGGGTCCTCTGAAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTCCTAGCACTGGAGCCATGAGTGAATCTGGGTCCTCTGAAAGA  798

seq1  GCAATGTATACTCTTTACTGCTGAATCCTCTCCGCAAACCCAGACTCCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTATACTCTTTACTGCTGAATCCTCTCCGCAAACCCAGACTCCCT  848

seq1  TACTTTTCAACCTCAGTTGCAGCACTGAGACTGCAGTGGGAGAGCTTGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAACCTCAGTTGCAGCACTGAGACTGCAGTGGGAGAGCTTGCC  898

seq1  TTGTGCATGTAAGGTGTTGGTTCAATTCTCAATTGTATAAACAATATTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGTAAGGTGTTGGTTCAATTCTCAATTGTATAAACAATATTTT  948

seq1  ACTGCATTAGTCCTAACATTTCATATTACAGGGGGGCGTCTATTTTTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTAGTCCTAACATTTCATATTACAGGGGGGCGTCTATTTTTTTT  998

seq1  CTCGATCAGTCATGAATTTTATCTTTTTTTTAAAATATATACT  1036
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATCAGTCATGAATTTTATCTTTTTTTTAAAATATATACT  1041

seq1: chr19_24044549_24045421
seq2: B6Ng01-327K09.g_68_941

seq1  GAATTCAGAATTCAGAAGCCGAGGTGATGATGGGCCAACCTTTGACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTCAGAAGCCGAGGTGATGATGGGCCAACCTTTGACTAAG  50

seq1  ACTGCTAAATTATACAAACATCTATCCTCCTGCTGCGTTTCATCCTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAATTATACAAACATCTATCCTCCTGCTGCGTTTCATCCTCAGT  100

seq1  TTGAACCTAAAGCGTCTATCAACACACCAAGACAAATCTGGGGTCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTAAAGCGTCTATCAACACACCAAGACAAATCTGGGGTCACTGG  150

seq1  ACCCCCTTATCTTCCGACCATCCCAATGGACACTAATTGATTTTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTTATCTTCCGACCATCCCAATGGACACTAATTGATTTTTCTCTG  200

seq1  TTTTTACATCACTGCTTGCTTCTGTAGTCGGTGGGTTGGGATGATGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATCACTGCTTGCTTCTGTAGTCGGTGGGTTGGGATGATGGCTG  250

seq1  AGCTTGGCCTGTAGGAACTTCTGGAGGGTAACCAGATTTTTGCCAGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGCCTGTAGGAACTTCTGGAGGGTAACCAGATTTTTGCCAGTTAG  300

seq1  GTCCTTCAGCAAATGTCTGGTTCTTGTGGTAAATGTAAGCAGGCAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAGCAAATGTCTGGTTCTTGTGGTAAATGTAAGCAGGCAGGCAG  350

seq1  CTGGACTTCAGAGCCTCCTCCCTGAAACCTCACTACCAGGCAGGACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTCAGAGCCTCCTCCCTGAAACCTCACTACCAGGCAGGACTCTT  400

seq1  GGGGCAGTAAGCCTTCAGCCAGTCTTCCTAAAGTGCAAAAGCTGGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGTAAGCCTTCAGCCAGTCTTCCTAAAGTGCAAAAGCTGGGAAAG  450

seq1  TCTTCCTCTCTGGCCTCAGAAACCCAGATATAGAGCTTGCTGGAACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTCTGGCCTCAGAAACCCAGATATAGAGCTTGCTGGAACATTT  500

seq1  TGAAGGGGCAACCCCTGTCCTGATTTATCCTGCGCCAAGCTCACAAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGCAACCCCTGTCCTGATTTATCCTGCGCCAAGCTCACAAAGTG  550

seq1  AGCGTCGTGTTCTTACTCAACTGAAGCAGGGCCAACAATAACTGTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCGTGTTCTTACTCAACTGAAGCAGGGCCAACAATAACTGTACAAG  600

seq1  GCTCTAGGCATCCAGATATCCTGAGTGACATTCACTTTGCTAGTGAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGCATCCAGATATCCTGAGTGACATTCACTTTGCTAGTGAAGAC  650

seq1  TTACTTCAAATATTTCTCTGCTCAGTAATCAATGCTGTTATCATTCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAAATATTTCTCTGCTCAGTAATCAATGCTGTTATCATTCTGAT  700

seq1  GTCACACTTGAAATCCTTTGTCTCTACCTCTGGACCGTGGATCCCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTTGAAATCCTTTGTCTCTACCTCTGGACCGTGGATCCCTGTGG  750

seq1  TGTTTTAATGAAAAACAGCCTGCCCTATATATACTCAGTTAACCTATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAATGAAAAACAGCCTGCCCTATATATACTCAGTTAACCTATGTA  800

seq1  TATGCATGCCACACTTTTAATACTTTGGCATTTGAGAATATTTACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGCCACACTTTTAATACTTTGGCATTTGAGAATATTTACACACA  850

seq1  CGGGGC-GGGGGGGGGCGGGGGGG  873
      |||||| |||||||||||||||||
seq2  CGGGGCGGGGGGGGGGCGGGGGGG  874