BAC Information

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BAC

Clone NameB6Ng01-328P05
Chromosome19 (Build37)
Map Location 37,582,921 - 37,583,813
singlet/doubletsinglet
Overlap genenone
Upstream geneHectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
Downstream geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328P05.bB6Ng01-328P05.g
ACCGA116066GA116067
length1,227902
definitionB6Ng01-328P05.b B6Ng01-328P05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcaggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccagtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggaaaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctccgccttaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccattgccttgacgtgggaatcctct
gaagggcagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcgggagggtattcagctaaagcaaaaaatatcatggca
aagatgggttataaagaaggaaaagggttaggacatcaagaacagggaaa
ggatagagcccatctcacctaatggaaaccaagacagacagggtctgggt
ttttccttagtggccattgggggcagcacgacccataccatgaaaacagg
gacccagtgtgggttcctcaatgcacctatcctctgaaaactagagctgt
gatcaactggtagaggacataaatagcatatgacctctacctcactgaat
actcaattttgtaattagaaaaagtcaggaaagtggaactgctcatgacc
ttcaacataatgacaatgaaccttattggtcagtacagaaggtctcctgt
taccttatcgccgcccgttatatgcag
gaattcttgcttctctgctccagttccatgactcacaactggttacaact
actatgtctggttctggggttccctgtcccatttgtcttgacaatggaca
gatgcacgctctcctagccccatgcagcagtgatacgtgctggttgtttc
tagttctttttctgctgctatgaattggctcacaccaattatgacggcac
aggaggagacccaaaggagctggtgatatgctcttagttgtggaagttga
acaatgtaccattaaattattgtatttattattattattaatttatttat
cttttggttttcagacagaaagtctctgtgtagagtaggctggtcttgaa
cccctgcctctgcctcctgggtgctagaattaaaggggtgtactactaca
ccacgctcagtgatcttaaattcatttatttatttatttatttatttatg
ttttttgatttttcgagacagggtttctctgtatagccctggctgtcctg
gaactcactctgtagaccaggctgacctcgaactcagaaatccacctgcc
tctgcctcccgagtgctgggattaaaggcttgtgccaccatgcccggctc
aatcttaaattcttaacttcactcagtacatggctgtgtaaatttcagtc
tctttggacctccactttttgaccttgtaaaatgggttgggaaatgtttg
ctgtatggataccaaagagtgggtgagtgggacgcatgctgatacaaaaa
gtaaatcgcaccttaaaaggtgtgtgctgtaaaagagaaataatagagtt
agttgcaataatgacacaaatgataaaattttgagttcttttttttagga
agataagtccccccagaagtctgaagaagaggtggggcaaaacggggaaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37582921_37583813
seq2: B6Ng01-328P05.g_71_972

seq1  GAATTCTTGCTTCTCTGCTCCAGTTCCATGACTCACAACTGGTTACAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTCTCTGCTCCAGTTCCATGACTCACAACTGGTTACAACT  50

seq1  ACTATGTCTGGTTCTGGGGTTCCCTGTCCCATTTGTCTTGACAATGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCTGGTTCTGGGGTTCCCTGTCCCATTTGTCTTGACAATGGACA  100

seq1  GATGCACGCTCTCCTAGCCCCATGCAGCAGTGATACGTGCTGGTTGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACGCTCTCCTAGCCCCATGCAGCAGTGATACGTGCTGGTTGTTTC  150

seq1  TAGTTCTTTTTCTGCTGCTATGAATTGGCTCACACCAATTATGACGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTTTTCTGCTGCTATGAATTGGCTCACACCAATTATGACGGCAC  200

seq1  AGGAGGAGACCCAAAGGAGCTGGTGATATGCTCTTAGTTGTGGAAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGACCCAAAGGAGCTGGTGATATGCTCTTAGTTGTGGAAGTTGA  250

seq1  ACAATGTACCATTAAATTATTGTATTTATTATTATTATTAATTTATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTACCATTAAATTATTGTATTTATTATTATTATTAATTTATTTAT  300

seq1  CTTTTGGTTTTCAGACAGAAAGTCTCTGTGTAGAGTAGGCTGGTCTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTTTTCAGACAGAAAGTCTCTGTGTAGAGTAGGCTGGTCTTGAA  350

seq1  CCCCTGCCTCTGCCTCCTGGGTGCTAGAATTAAAGGGGTGTACTACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCTGCCTCCTGGGTGCTAGAATTAAAGGGGTGTACTACTACA  400

seq1  CCACGCTCAGTGATCTTAAATTCATTTATTTATTTATTTATTTATTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTCAGTGATCTTAAATTCATTTATTTATTTATTTATTTATTTATG  450

seq1  TTTTTTGATTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGATTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  500

seq1  GAACTCACTCTGTAGACCAGGCTGACCTCGAACTCAGAAATCCACCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGACCTCGAACTCAGAAATCCACCTGCC  550

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCTTGTGCCACCATGCCCGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGCTTGTGCCACCATGCCCGGCTC  600

seq1  AATCTTAAATTCTTAACTTCACTCAGTACATGGCTGTGT-AATTTCAGTC  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCTTAAATTCTTAACTTCACTCAGTACATGGCTGTGTAAATTTCAGTC  650

seq1  TCTTTGGACCTCCACTTTTTGACC-TGTAAAATGGGTTGGG-AATGTTTG  697
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  TCTTTGGACCTCCACTTTTTGACCTTGTAAAATGGGTTGGGAAATGTTTG  700

seq1  CTGTATGGATACCAAAGAGTGGGTGAGTGGGACGCATGCTGATAC-AAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGTATGGATACCAAAGAGTGGGTGAGTGGGACGCATGCTGATACAAAAA  750

seq1  GTAGATCGCACCTT-AAAGGTGTGTGCTGT-AAAGAGAAATAATAAAGTT  794
      ||| |||||||||| ||||||||||||||| |||||||||||||| ||||
seq2  GTAAATCGCACCTTAAAAGGTGTGTGCTGTAAAAGAGAAATAATAGAGTT  800

seq1  AGTTGCAATAATGACACAAATGATAAAA-TTTGAGTACTTTTTATAAGG-  842
      |||||||||||||||||||||||||||| ||||||| |||||| | ||| 
seq2  AGTTGCAATAATGACACAAATGATAAAATTTTGAGTTCTTTTTTTTAGGA  850

seq1  AGATAAGTCCCCCCAGAAGTCTGATGTAGAGGTGGGGC-AGACGGGGAAA  891
      |||||||||||||||||||||||| | ||||||||||| | |||||||||
seq2  AGATAAGTCCCCCCAGAAGTCTGAAGAAGAGGTGGGGCAAAACGGGGAAA  900

seq1  AA  893
      ||
seq2  AA  902