BAC Information

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BAC

Clone NameB6Ng01-333N14
Chromosome19 (Build37)
Map Location 44,931,182 - 45,101,649
singlet/doubletdoublet
Overlap geneLOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7
Upstream geneDnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450
Downstream geneEG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333N14.bB6Ng01-333N14.g
ACCGA119507GA119508
length299946
definitionB6Ng01-333N14.b B6Ng01-333N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,931,182 - 44,931,480)(45,100,705 - 45,101,649)
sequence
agggctagcctgggatttgcaagatctgtctcaaattcaaaaggaaaaaa
attatctaataggttataagttgatagttgttggttctgaaatcactgta
ccgttcactcacttttgtatatacttgaagttttaaaaaacaactgttta
aactaaggctatactgaaaagagctgttaaaatttggggtagccaggctg
gagatcagtgatggagtccttatctagaatgcctaatgtcctaggtcaaa
aagagaggaagggaagaaggaaggaagggaaggaaggaaggaaggaagg
gaattccatcataggtaggcgagcagccagcaagcagagatggatgtcaa
acaaattcccctgcagtttctttatccattgcactttttttttttaaaac
aaaacttttttttttttttaaatttttttcccctttgggtttgtacaaga
aatttacagtgtgaaaaatatacaagtggaaatgaggccgtaaccctgga
actagggaggacggcttggtcacaaacacaaataaacaagacattgctgg
gttcttcctttggtctgacttcagccccctcagcccagaagaggcttgca
gagctcaacatggggatcagccccatgcccggccctgcccctccacgtgg
acatgttgagggcaggcacatctggagcagctggttgccctcgggctctc
tctggcttcaggcaggtagatgcggagacagggaagcagcctctttccct
tcccagctggagtgggctggcagtggcgacagtgagggagtgaaatggca
gagtaggcaggagcctctgggtgacggtgacacagagggttgattctgct
gcttctccaagttacggagccacccgaatgctcggccgaggccctttggc
tctgagacctggagcgcgtgctcagtggatccccgggcaggtgggcctct
gtggctcagaccccttgcagagccctagatctcagtggcagtgatctcct
ccagacagatgcaaggggccgactccgccaggcccaaatccgcaagcttc
gcgggcctccagctccaggctcagttgctgcagttcctgctccagctgcc
ggttacgccggtacatctggatatagttgtgctgcagctgcttctggtag
cggatcacctgttccttctctgcctgccaggccagccgctccccctcaaa
gctgtccgttgctcgtcccctcgccgctgctcccgcgtgaagttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44931182_44931480
seq2: B6Ng01-333N14.b_54_352

seq1  AGGGCTAGCCTGGGATTTGCAAGATCTGTCTCAAATTCAAAAGGAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGCCTGGGATTTGCAAGATCTGTCTCAAATTCAAAAGGAAAAAA  50

seq1  ATTATCTAATAGGTTATAAGTTGATAGTTGTTGGTTCTGAAATCACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTAATAGGTTATAAGTTGATAGTTGTTGGTTCTGAAATCACTGTA  100

seq1  CCGTTCACTCACTTTTGTATATACTTGAAGTTTTAAAAAACAACTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCACTCACTTTTGTATATACTTGAAGTTTTAAAAAACAACTGTTTA  150

seq1  AACTAAGGCTATACTGAAAAGAGCTGTTAAAATTTGGGGTAGCCAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGGCTATACTGAAAAGAGCTGTTAAAATTTGGGGTAGCCAGGCTG  200

seq1  GAGATCAGTGATGGAGTCCTTATCTAGAATGCCTAATGTCCTAGGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGTGATGGAGTCCTTATCTAGAATGCCTAATGTCCTAGGTCAAA  250

seq1  AAGAGAGGAAGGGAAGAAGGAAGGAAGGGAAGGAAGGAAGGAAGGAAGG  299
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAAGGGAAGAAGGAAGGAAGGGAAGGAAGGAAGGAAGGAAGG  299

seq1: chr19_45100705_45101649
seq2: B6Ng01-333N14.g_67_1012 (reverse)

seq1  AGAACTGCA-GCGGGAGCAGCGGCGAGGGGACGAGCAACGGGACAGCTTT  49
      |||||| || ||||||||||||||||||||||||||||| ||||||||||
seq2  AGAACTTCACGCGGGAGCAGCGGCGAGGGGACGAGCAAC-GGACAGCTTT  49

seq1  GAGGGGGAGCGGCTGGCCTGGCAGGCAGAGAAGGAACAGGTGATCCGCTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAGCGGCTGGCCTGGCAGGCAGAGAAGGAACAGGTGATCCGCTA  99

seq1  CCAGAAGCAGCTGCAGCACAACTATATCCAGATGTACCGGCGTAACCGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCAGCTGCAGCACAACTATATCCAGATGTACCGGCGTAACCGGC  149

seq1  AGCTGGAGCAGGAACTGCAGCAACTGAGCCTGGAGCTGGAGGCCCGCG-A  198
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCTGGAGCAGGAACTGCAGCAACTGAGCCTGGAGCTGGAGGCCCGCGAA  199

seq1  GCTTGCGGATTTGGGCCTGGCGGAGTCGGCCCCTTGCATCTGTCTGGAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCGGATTTGGGCCTGGCGGAGTCGGCCCCTTGCATCTGTCTGGAGG  249

seq1  AGATCACTGCCACTGAGATCTAGGGCTCTGCAAGGGGTCTGAGCCACAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGCCACTGAGATCTAGGGCTCTGCAAGGGGTCTGAGCCACAGA  299

seq1  GGCCCACCTGCCCGGGGATCCACTGAGCACGCGCTCCAGGTCTCAGAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACCTGCCCGGGGATCCACTGAGCACGCGCTCCAGGTCTCAGAGCC  349

seq1  AAAGGGCCTCGGCCGAGCATTCGGGTGGCTCCGTAACTTGGAGAAGCAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCTCGGCCGAGCATTCGGGTGGCTCCGTAACTTGGAGAAGCAGC  399

seq1  AGAATCAACCCTCTGTGTCACCGTCACCCAGAGGCTCCTGCCTACTCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAACCCTCTGTGTCACCGTCACCCAGAGGCTCCTGCCTACTCTGC  449

seq1  CATTTCACTCCCTCACTGTCGCCACTGCCAGCCCACTCCAGCTGGGAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACTCCCTCACTGTCGCCACTGCCAGCCCACTCCAGCTGGGAAGG  499

seq1  GAAAGAGGCTGCTTCCCTGTCTCCGCATCTACCTGCCTGAAGCCAGAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGCTGCTTCCCTGTCTCCGCATCTACCTGCCTGAAGCCAGAGAG  549

seq1  AGCCCGAGGGCAACCAGCTGCTCCAGATGTGCCTGCCCTCAACATGTCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGAGGGCAACCAGCTGCTCCAGATGTGCCTGCCCTCAACATGTCCA  599

seq1  CGTGGAGGGGCAGGGCCGGGCATGGGGCTGATCCCCATGTTGAGCTCTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAGGGGCAGGGCCGGGCATGGGGCTGATCCCCATGTTGAGCTCTGC  649

seq1  AAGCCTCTTCTGGGCTGAGGGGGCTGAAGTCAGACCAAAGGAAGAACCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTTCTGGGCTGAGGGGGCTGAAGTCAGACCAAAGGAAGAACCCA  699

seq1  GCAATGTCTTGTTTATTTGTGTTTGTGACCAAGCCGTCCTCCCTAGTTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTCTTGTTTATTTGTGTTTGTGACCAAGCCGTCCTCCCTAGTTCC  749

seq1  AGGGTTACGGCCTCATTTCCACTTGTATATTTTTCACACTGTAAATTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACGGCCTCATTTCCACTTGTATATTTTTCACACTGTAAATTTCT  799

seq1  TGTACAAACCCAAAGGGGAAAAAAATTTAAAAAAAAAAAAAAGTTTTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAACCCAAAGGGGAAAAAAATTTAAAAAAAAAAAAAAGTTTTGTT  849

seq1  TTAAAAAAAAAAAGTGCAATGGATAAAGAAACTGCAGGGGAATTTGTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAGTGCAATGGATAAAGAAACTGCAGGGGAATTTGTTTG  899

seq1  ACATCCATCTCTGCTTGCTGGCTGCTCGCCTACCTATGATGGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATCTCTGCTTGCTGGCTGCTCGCCTACCTATGATGGAATTC  946