BAC Information

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BAC

Clone NameB6Ng01-334D19
Chromosome1 (Build37)19 (Build37)
Map Location 193,002,867 - 193,003,70610,251,628 - 10,252,303
singlet/doubletsingletsinglet
Overlap geneAtf3
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik
Downstream geneNenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334D19.bB6Ng01-334D19.g
ACCGA119792GA119793
length836906
definitionB6Ng01-334D19.b B6Ng01-334D19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(193,002,867 - 193,003,706)(10,251,628 - 10,252,303)
sequence
gaattccacccctggactgttggggtttttgtttgtttgtctgtatttcc
agtaaaatgcaaaggaaaatatatgcgaggatgccgagcctctggcttca
gaagtcataaaaacatcccccaggtaaaggttacagcttccaattaagag
accttcagttcttactcctgtctggaaaacaattgtatacatctttttga
gttcatttactgctcgggaatttctgcctccgccagtgggcctgattatc
cagggaaagggatcttcaggaagggctccagaaagtgaccagaccccagg
gagtctccgtaggacagcagccctccctctgtgggagctcctgggagacc
cagagtagctcctcatggcagaatgctttccagggcatttcttgtattat
ttcccaaattgcttccaccactcttggggaattagggtactcattaccag
ccttcctttacagaagagatagatcaccagggtactatcaccacacataa
ctgagcagtcttgaaatctcaattaacaaacaaacaaacaaacaaattct
ggtatagggattttatggaaggctgtgagttctgaaaccacgcaaacaaa
tcccagtgccccatactatcccatgttaatgtgatctgactaaatctcac
taagttcatgtctaaaatgggactagttatcacaacgctggctgcaaagc
tcaagggagacgaggtacatagatttctccttaaatgttagagatttgcc
aaaagctcactgtcctctgggacttggctgatgaccagtgtagccgagga
cagtccctatacgctcctgatttgggaaacggcccg
gaattcctcgtgaagtgtactggcaccattgacctgcccatccatcccct
ctccttacagcctgcccaatgggtcccttcctccctcccaagcaactcca
tttccactttcatgtcatatataatactacaatggtcccattccagctga
tgctaatgagggtccagactctccaacagccctcagcgtgctcaagggtc
ctggagtgtgtgtgtgtgggggggggaactcagctcttctattcacaagt
caaaggtatgatgagctgaaacagtactgagtatggtcgtgcccggcaac
ctaagggttgtaacattcttgtaacaacagaatctcaaatcacatgtgct
gaactttcagccaatcgcagtctgcaaattgcccagcgacatgtgtataa
gacaactactgagatgttactaatcggcttcttcctctacatcacttcct
tttcctgcccataaatatccccagcccctttgcttcatggaaccttcttt
ctgaaccttctctcggctcaggctactctctgattcctaagtcttttctc
agcacaaataaagcctgctaaatttaattagtctaaaggtgttttctttc
cttcttatattaacagctggatgagggcttaattgtgattttaattgact
tccagagggtttcaggtcagttctactcctagtaaaggctcctggagttg
tgcttggagctctcaaactatctctgaacaattttagctgcagagagccc
atgatttgatcagctctaacaattaactagtctggatctagttaagagag
ctcaggtatttttttaaaaaacagatactctttaaattctaggaagttct
gggaatcttaagagtctagttctctctctctctcttctctctcttctctc
tctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193002867_193003706
seq2: B6Ng01-334D19.b_44_879 (reverse)

seq1  CGGGCCTTTTCCCAAAGCAGGAGCGGTATAGGGACCGTCCTCGGCTACAC  50
      |||||| ||||||||| ||||||| |||||||||| ||||||||||||||
seq2  CGGGCCGTTTCCCAAATCAGGAGC-GTATAGGGACTGTCCTCGGCTACAC  49

seq1  TGGTCATCAGCCAAGTCCCAGAGGGCAGTGAGCCTTTTGGCAAATCTCTA  100
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TGGTCATCAGCCAAGTCCCAGAGGACAGTGAG-CTTTTGGCAAATCTCTA  98

seq1  ACATTTAAGGAGAAATCTATCTACCTTGTCTCCCTTGAGCTTTGCAGCCA  150
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  ACATTTAAGGAGAAATCTATGTACCTCGTCTCCCTTGAGCTTTGCAGCCA  148

seq1  GCGTTGTGAAAACTAGTCCCATTTTAGACATGAACTTACTGAGATTTAGT  200
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  GCGTTGTGATAACTAGTCCCATTTTAGACATGAACTTAGTGAGATTTAGT  198

seq1  CAGATCACATTAACATGGGATAGTATGGGGCACTGGGATTTGTTTTGCGT  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGATCACATTAACATGGGATAGTATGGGGCACTGGGATTTG-TTTGCGT  247

seq1  GGTTTCAGAACTCACAGCCTTCCATAAAATCCCTATACCAGAATTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGAACTCACAGCCTTCCATAAAATCCCTATACCAGAATTTGTTT  297

seq1  GTTTGTTTGTTTGTTAACTGAGATTTGAAGACTGCTCAGTTATGTGTGGT  350
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTAATTGAGATTTCAAGACTGCTCAGTTATGTGTGGT  347

seq1  GATAGTACCCTGGTGTACTATCTCTTCTGTAAAGGAAGGCTGGTAATGAG  400
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GATAGTACCCTGGTGATCTATCTCTTCTGTAAAGGAAGGCTGGTAATGAG  397

seq1  TACCCTAATTCCCCAAGAGTGGTGGAAGCAATTTGGGAAATAATACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAATTCCCCAAGAGTGGTGGAAGCAATTTGGGAAATAATACAAGA  447

seq1  AATGCCCTGGAAAGCATTCTGCCATGAGGAGCTACTCTGGGTCTCCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTGGAAAGCATTCTGCCATGAGGAGCTACTCTGGGTCTCCCAGG  497

seq1  AGCTCCCACAGAGGGATGGCTGCTCTCCTACGGAGACTCCCTGGGGTCTG  550
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  AGCTCCCACAGAGGGAGGGCTGCTGTCCTACGGAGACTCCCTGGGGTCTG  547

seq1  GTCACCTTCTTGAGCCCTTCCTGAAGATCCCTTTCCCTGGATATTAAGGC  600
      ||||| |||| |||||||||||||||||||||||||||||||| | ||||
seq2  GTCACTTTCTGGAGCCCTTCCTGAAGATCCCTTTCCCTGGATAATCAGGC  597

seq1  CCACTGGTGGAGGCAGAAATTCCAGAGCAGTAAAAGAACTCAAAAAGATG  650
      ||||||| ||||||||||||||| |||||||||| |||||||||||||||
seq2  CCACTGGCGGAGGCAGAAATTCCCGAGCAGTAAATGAACTCAAAAAGATG  647

seq1  TATACAATTCTTTTCCAGACAGGAGTAAGAACTGAAGGTCTCTTAATTGG  700
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTGTTTTCCAGACAGGAGTAAGAACTGAAGGTCTCTTAATTGG  697

seq1  AAGCTGTAACCTTGTACCTGGGGGATGTTTCTATGACTTCTGAAGCCAGA  750
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  AAGCTGTAACCTT-TACCTGGGGGATGTTTTTATGACTTCTGAAGCCAGA  746

seq1  GGCTCGGCATCCTCCTATATATTCTCCTTTGCATTTTATTGGAAATACAG  800
      ||||||||||||||  ||||||| |||||||||||||| |||||||||||
seq2  GGCTCGGCATCCTCGCATATATTTTCCTTTGCATTTTACTGGAAATACAG  796

seq1  ACAAACAAACAAAAACCCCAACAGTCCAGGGGTGGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAAACCCCAACAGTCCAGGGGTGGAATTC  836

seq1: chr19_10251628_10252303
seq2: B6Ng01-334D19.g_293_971

seq1  ACTCAGCTCTTCTATTCACAAGTCAAAGGTATGATGAGCTGAAACAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTCTTCTATTCACAAGTCAAAGGTATGATGAGCTGAAACAGTAC  50

seq1  TGAGTATGGTCGTGCCCGGCAACCTAAGGGTTGTAACATTCTTGTAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGGTCGTGCCCGGCAACCTAAGGGTTGTAACATTCTTGTAACAA  100

seq1  CAGAATCTCAAATCACATGTGCTGAACTTTCAGCCAATCGCAGTCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTCAAATCACATGTGCTGAACTTTCAGCCAATCGCAGTCTGCAA  150

seq1  ATTGCCCAGCGACATGTGTATAAGACAACTACTGAGATGTTACTAATCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCAGCGACATGTGTATAAGACAACTACTGAGATGTTACTAATCGG  200

seq1  CTTCTTCCTCTACATCACTTCCTTTTCCTGCCCATAAATATCCCCAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTCTACATCACTTCCTTTTCCTGCCCATAAATATCCCCAGCCC  250

seq1  CTTTGCTTCATGGAACCTTCTTTCTGAACCTTCTCTCGGCTCAGGCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCATGGAACCTTCTTTCTGAACCTTCTCTCGGCTCAGGCTACT  300

seq1  CTCTGATTCCTAAGTCTTTTCTCAGCACAAATAAAGCCTGCTAAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTCCTAAGTCTTTTCTCAGCACAAATAAAGCCTGCTAAATTTAA  350

seq1  TTAGTCTAAAGGTGTTTTCTTTCCTTCTTATATTAACAGCTGGATGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTAAAGGTGTTTTCTTTCCTTCTTATATTAACAGCTGGATGAGGG  400

seq1  CTTAATTGTGATTTTAATTGACTTCCAGAGGGTTTCAGGTCAGTTCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGTGATTTTAATTGACTTCCAGAGGGTTTCAGGTCAGTTCTACT  450

seq1  CCTAGT-AAGGCTCCTGGAGTTGTGCTTGGAGCTCTCAAACTATCTCTGA  499
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAAAGGCTCCTGGAGTTGTGCTTGGAGCTCTCAAACTATCTCTGA  500

seq1  ACAATTTTAGCTGCAGAGAGCCCATGATTTGATCAGCTCTAACAATTAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTAGCTGCAGAGAGCCCATGATTTGATCAGCTCTAACAATTAAC  550

seq1  TAGTCTGGATCTAGTTAAGAGAGCTCAGGTA-TTTTTTAAAAAACAGATA  598
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGTCTGGATCTAGTTAAGAGAGCTCAGGTATTTTTTTAAAAAACAGATA  600

seq1  CTCTTTAAA-TCTAGGAAG-TCTGGGAATC-TAAGAGTCTAGTTCTCTCT  645
      ||||||||| ||||||||| |||||||||| |||||||||||||||||||
seq2  CTCTTTAAATTCTAGGAAGTTCTGGGAATCTTAAGAGTCTAGTTCTCTCT  650

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  676
      |||||||| ||||||||| ||||||||||||
seq2  CTCTCTCT-TCTCTCTCT-TCTCTCTCTCTC  679