BAC Information

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BAC

Clone NameB6Ng01-336I19
Chromosome19 (Build37)
Map Location 16,081,659 - 16,218,098
singlet/doubletdoublet
Overlap geneLOC100042048, Gnaq
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78
Downstream geneE030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336I19.bB6Ng01-336I19.g
ACCGA121439GA121440
length1,1771,159
definitionB6Ng01-336I19.b B6Ng01-336I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,216,924 - 16,218,098)(16,081,659 - 16,082,838)
sequence
gaattcaagactagcctgaaaaagaaaaaagcctgcaagagatttaaaga
tggtgacctccttgatagtgccaaggctgaaatgcctaagttctttctgc
aagacaagcctctacatgaggatgaatctctctggcaacaatggctcgtg
atactgcttatcttcttgttgctttgggcaactgaaatgtgctcggctgt
aggagaaacaagccaaataaaagcatttcctggacaaggatggctcaaga
cactccctcataacttattacaggagagcagggttctcagaacatattgc
taagtacctcaaagagttgtcagaaaacaaaaaataagaaaagccgcggt
gcagccgcgcggcaaactttctttttcgatgtgaatggctctttctaaga
ctctgctgtgcatgagctctgtgctatttctactctgcaggagagtgaca
acaacacacagtcctcccagccaacccaagcttccttgactgtatatctc
ccacttcaccacctgagaggaacggcaccatgaggagagaaggcagatca
acgggtgcactagggagcgagctggagatgcagcactgacctgctctttg
tgacagaggccacggagtaagcaactgacatttctcctttgttctgtgct
ctccatcagagattggtgaagacatagccacagggccctaccacagcagc
accctctgcctttccacaccttgggtcccatctctgtcctctgccctggg
accattctggccctaagactgtgcaaccacaaacccaagagcaaagccaa
gagcctgatactgagatgacaagaagacaacagcccaaggaaaggagggc
ttgcttggcagagtcagtcagagcctggcacctctgcagatctggctctt
ctcagcattcccaagacctcagtgagaatcctgatgttgcttctttgacc
acagcccttctagagatagacaagtgacacaggaagttgcattcttaagg
ttcctcttaactgtgcacatgccaactagaatggtgcagcggtcaggagc
atccaaatacatctaaaacaaaaaggtatgacattccttctacacagatc
cctgtcacagacattttcctggtgttcaggccctagaagataggtaccgt
gatgtaatgatgaatgagcacaaacgc

gaattcccattgcctgtgcattcctcttctcactttttccacccaggcaa
accgatgatgtcttttttagctggccgttcacagctccctcggcagtgcc
tgagcacttagaccatcacttgcttccttctgcccacactccattcctct
tccagatggctcttgggaagagtcctgttgcttccaggctagctatctct
cacgggtgatacaaatctggtcctcaggaaagacacttctcatcagtcag
cttctaaacatatctgtctctctgcatttgaatcttcttgttcgaatcag
atgctaatttagtcccttaagctgaggatgacgcatcttagactgtccac
gtgaattccctcagatcatcccttctctctagagtcactgtcttctccct
ccctgtggcatacagccctctgatagctatctccaggatcatttttcctt
caaattttatgtacttcatctcctttatgttttctgtttgatggatgaat
tctgccatccttttttttggatatctcttttgaaatgttatggtttgctt
tgcatcttcacttctcagtcaaagcactctcaaggaactttccatcacat
aagcaggcgtaagactcaaggacatgcgtgtgacaccattgcaactgcca
ttcatcaactgcctaaattctcatgcactctttatgtggtattcatcgtg
ctccctcagaaactacactgcagcgtgcttgtcattagcatgtccaaggc
aagagccagttcaccctttttcaagggttctgggctcagccatagtcaga
ataatactgaccacattattcaatttagtcatttcttttgcttacattct
caaaaattaaggtacatttctttatcatgggacagtgcattgatggtttt
acaaactgtaaaagccatacataattattgcaaagagaatgcttcaagag
atgtaaacaacactttcatcactagagagatgggatatcttttatttttc
atagtgtgataaaaatgaaataattctgttgcactacatagtttgagttt
ttttttgcatgactgtgtctaagttgtcattttaaaatctctcctgggag
ctagagagatggtacattgcttagagtactgacatctcgagaagcctgga
tgaattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16216924_16218098
seq2: B6Ng01-336I19.b_46_1222 (reverse)

seq1  GCGTTTGTGCTCA-TCATCATTACATCACGGTACCCTATCTTCTTAGGGC  49
      ||||||||||||| ||||||||||||||||||| ||||||||| ||||||
seq2  GCGTTTGTGCTCATTCATCATTACATCACGGTA-CCTATCTTC-TAGGGC  48

seq1  TTGAACA-CAGGAAAATGTCTGTGACAGGGATCTGTGTAGAAGGAATGTC  98
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACCAGGAAAATGTCTGTGACAGGGATCTGTGTAGAAGGAATGTC  98

seq1  ATACCTTTTTGTTTTAGATGTATTT-GATGCT-CTGACCGCTGCACCATT  146
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  ATACCTTTTTGTTTTAGATGTATTTGGATGCTCCTGACCGCTGCACCATT  148

seq1  CTAGTTGGCATGTGCACAGTTAAGAGGAACCTTAAGAATGCAACTTCCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGGCATGTGCACAGTTAAGAGGAACCTTAAGAATGCAACTTCCTG  198

seq1  TGTCACTTGTCTATCTCTAGAAGGGCTGTGGTCAAAGAAGCAACATCAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGTCTATCTCTAGAAGGGCTGTGGTCAAAGAAGCAACATCAGG  248

seq1  ATTCTCACTGAGGTCTTGGGAATGCTGAGAAGAGCCAGATCTGCAGAGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTGAGGTCTTGGGAATGCTGAGAAGAGCCAGATCTGCAGAGGT  298

seq1  GCCAGGCTCTGACTGACTCTGCCAAGCAAGCCCTCCTTTCCTTGGGCTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTCTGACTGACTCTGCCAAGCAAGCCCTCCTTTCCTTGGGCTGT  348

seq1  TGTCTTCTTGTCATCTCAGTATCAGGCTCTTGGCTTTGCTCTTGGGTTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTGTCATCTCAGTATCAGGCTCTTGGCTTTGCTCTTGGGTTTG  398

seq1  TGGTTGCACAGTCTTAGGGCCAGAATGGTCCCAGGGCAGAGGACAGAGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCACAGTCTTAGGGCCAGAATGGTCCCAGGGCAGAGGACAGAGAT  448

seq1  GGGACCCAAGGTGTGGAAAGGCAGAGGGTGCTGCTGTGGTAGGGCCCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCAAGGTGTGGAAAGGCAGAGGGTGCTGCTGTGGTAGGGCCCTGT  498

seq1  GGCTATGTCTTCACCAATCTCTGATGGAGAGCACAGAACAAAGGAGAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTCTTCACCAATCTCTGATGGAGAGCACAGAACAAAGGAGAAAT  548

seq1  GTCAGTTGCTTACTCCGTGGCCTCTGTCACAAAGAGCAGGTCAGTGCTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGCTTACTCCGTGGCCTCTGTCACAAAGAGCAGGTCAGTGCTGC  598

seq1  ATCTCCAGCTCGCTCCCTAGTGCACCCGTTGATCTGCCTTCTCTCCTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGCTCGCTCCCTAGTGCACCCGTTGATCTGCCTTCTCTCCTCAT  648

seq1  GGTGCCGTTCCTCTCAGGTGGTGAAGTGGGAGATATACAGTCAAGGAAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCGTTCCTCTCAGGTGGTGAAGTGGGAGATATACAGTCAAGGAAGC  698

seq1  TTGGGTTGGCTGGGAGGACTGTGTGTTGTTGTCACTCTCCTGCAGAGTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGGCTGGGAGGACTGTGTGTTGTTGTCACTCTCCTGCAGAGTAG  748

seq1  AAATAGCACAGAGCTCATGCACAGCAGAGTCTTAGAAAGAGCCATTCACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCACAGAGCTCATGCACAGCAGAGTCTTAGAAAGAGCCATTCACA  798

seq1  TCGAAAAAGAAAGTTTGCCGCGCGGCTGCACCGCGGCTTTTCTTATTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAAAGAAAGTTTGCCGCGCGGCTGCACCGCGGCTTTTCTTATTTTT  848

seq1  TGTTTTCTGACAACTCTTTGAGGTACTTAGCAATATGTTCTGAGAACCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGACAACTCTTTGAGGTACTTAGCAATATGTTCTGAGAACCCT  898

seq1  GCTCTCCTGTAATAAGTTATGAGGGAGTGTCTTGAGCCATCCTTGTCCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTGTAATAAGTTATGAGGGAGTGTCTTGAGCCATCCTTGTCCAG  948

seq1  GAAATGCTTTTATTTGGCTTGTTTCTCCTACAGCCGAGCACATTTCAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTTTTATTTGGCTTGTTTCTCCTACAGCCGAGCACATTTCAGTT  998

seq1  GCCCAAAGCAACAAGAAGATAAGCAGTATCACGAGCCATTGTTGCCAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGCAACAAGAAGATAAGCAGTATCACGAGCCATTGTTGCCAGAG  1048

seq1  AGATTCATCCTCATGTAGAGGCTTGTCTTGCAGAAAGAACTTAGGCATTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATCCTCATGTAGAGGCTTGTCTTGCAGAAAGAACTTAGGCATTT  1098

seq1  CAGCCTTGGCACTATCAAGGAGGTCACCATCTTTAAATCTCTTGCAGGCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGGCACTATCAAGGAGGTCACCATCTTTAAATCTCTTGCAGGCT  1148

seq1  TTTTTCTTTTTCAGGCTAGTCTTGAATTC  1175
      |||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTCAGGCTAGTCTTGAATTC  1177


seq1: chr19_16081659_16082838
seq2: B6Ng01-336I19.g_69_1227

seq1  GAATTCCCATTGCCTGTGCATTCCTCTTCTCACTTTTTCCACCCAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTGCCTGTGCATTCCTCTTCTCACTTTTTCCACCCAGGCAA  50

seq1  ACCGATGATGTCTTTTTTAGCTGGCCGTTCACAGCTCCCTCGGCAGTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATGATGTCTTTTTTAGCTGGCCGTTCACAGCTCCCTCGGCAGTGCC  100

seq1  TGAGCACTTAGACCATCACTTGCTTCCTTCTGCCCACACTCCATTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTTAGACCATCACTTGCTTCCTTCTGCCCACACTCCATTCCTCT  150

seq1  TCCAGATGGCTCTTGGGAAGAGTCCTGTTGCTTCCAGGCTAGCTATCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGGCTCTTGGGAAGAGTCCTGTTGCTTCCAGGCTAGCTATCTCT  200

seq1  CACGGGTGATACAAATCTGGTCCTCAGGAAAGACACTTCTCATCAGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTGATACAAATCTGGTCCTCAGGAAAGACACTTCTCATCAGTCAG  250

seq1  CTTCTAAACATATCTGTCTCTCTGCATTTGAATCTTCTTGTTCGAATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAACATATCTGTCTCTCTGCATTTGAATCTTCTTGTTCGAATCAG  300

seq1  ATGCTAATTTAGTCCCTTAAGCTGAGGATGACGCATCTTAGACTGTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTTAGTCCCTTAAGCTGAGGATGACGCATCTTAGACTGTCCAC  350

seq1  GTGAATTCCCTCAGATCATCCCTTCTCTCTAGAGTCACTGTCTTCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCCCTCAGATCATCCCTTCTCTCTAGAGTCACTGTCTTCTCCCT  400

seq1  CCCTGTGGCATACAGCCCTCTGATAGCTATCTCCAGGATCATTTTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGCATACAGCCCTCTGATAGCTATCTCCAGGATCATTTTTCCTT  450

seq1  CAAATTTTATGTACTTCATCTCCTTTATGTTTTCTGTTTGATGGATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTATGTACTTCATCTCCTTTATGTTTTCTGTTTGATGGATGAAT  500

seq1  TCTGCCATCCTTTTTTTTGGATATCTCTTTTGAAATGTTATGGTTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATCCTTTTTTTTGGATATCTCTTTTGAAATGTTATGGTTTGCTT  550

seq1  TGCATCTTCACTTCTCAGTCAAAGCACTCTCAAGGAACTTTCCATCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTCACTTCTCAGTCAAAGCACTCTCAAGGAACTTTCCATCACAT  600

seq1  AAGCAGGCGTAAGACTCAAGGACATGCGTGTGACACCATTGCAACTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCGTAAGACTCAAGGACATGCGTGTGACACCATTGCAACTGCCA  650

seq1  TTCATCAACTGCCTAAATTCTCATGCACTCTTTATGTGGTATTCATCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAACTGCCTAAATTCTCATGCACTCTTTATGTGGTATTCATCGTG  700

seq1  CTCCCTCAGAAACTACACTGCAGCGTGCTTGTCATTAGCATGTCCAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAGAAACTACACTGCAGCGTGCTTGTCATTAGCATGTCCAAGGC  750

seq1  AAGAGCCAGTTCACCCTTTTTCAAGGGTTCTGGGCTCAGCCATAGTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGTTCACCCTTTTTCAAGGGTTCTGGGCTCAGCCATAGTCAGA  800

seq1  ATAATACTGACCACATTATTCAATTTAGTCATTTCTTTTGCTTACATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTGACCACATTATTCAATTTAGTCATTTCTTTTGCTTACATTCT  850

seq1  CAAAAATTAAGGTACATTTCTTTATCATGGGACAGTGCATTGATGGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTAAGGTACATTTCTTTATCATGGGACAGTGCATTGATGGTTTT  900

seq1  ACAAACTGTAAAAGCCATACATAATTATTGCAAAAGAGAATGCTTCAAAG  950
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  ACAAACTGTAAAAGCCATACATAATTATTGC-AAAGAGAATGCTTC-AAG  948

seq1  AGATGTAAACAACACTTTCATCACTAGAGAGATGGGATATCTTTTATTTT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGATGTAAACAACACTTTCATCACTAGAGAGATGGGATATCTTTTA-TTT  997

seq1  TTCATAGTGGTGATAAAAATGAAATAATTCTTGGTTGCCACTACAATAGT  1050
      |||||||| ||||||||||||||||||||||  |||| |||||| |||||
seq2  TTCATAGT-GTGATAAAAATGAAATAATTCT--GTTG-CACTAC-ATAGT  1042

seq1  TTGAGTTTTTTTTTTGGTATGAACTGTGTTCTAAATTTGTCATTTTTAAA  1100
      ||||||||||||||  | ||| |||||| ||| || ||||||||||  ||
seq2  TTGAGTTTTTTTTT--GCATG-ACTGTG-TCT-AAGTTGTCATTTT--AA  1085

seq1  AATCTCTCTGGGGAGCTAGAGAGATGGTACAATGGTTAAGAGTACTGACC  1150
      ||||||||  ||||||||||||||||||||| || || ||||||||||| 
seq2  AATCTCTCCTGGGAGCTAGAGAGATGGTACATTGCTT-AGAGTACTGACA  1134

seq1  ACTCTTCCAGAG-AGCCTGGATTTGATTCTC  1180
       |||     ||| |||||||| |  ||||||
seq2  TCTC-----GAGAAGCCTGGA-TGAATTCTC  1159


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