BAC Information

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BAC

Clone NameB6Ng01-336L12
Chromosome19 (Build37)
Map Location 38,234,170 - 38,272,442
singlet/doubletdoublet
Overlap genePde6c, 5730455O13Rik
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4
Downstream geneLgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336L12.bB6Ng01-336L12.g
ACCGA121558GA121559
length1,130703
definitionB6Ng01-336L12.b B6Ng01-336L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,234,170 - 38,235,299)(38,271,740 - 38,272,442)
sequence
gaattccacacctctattgctttcccattttagaagtttaaagagaagtt
aaatgtagaggtaattgaagagtgtgaagagagacagctcctggccatat
tggtaagtgtttctttgtttctttctgatcctggtgtctttttaaataaa
acctatttggacacactctcattttttttccaagaaaatgttgtttcttc
ttcttcctcctcctctccctccccctctccctcttctaaccttatccaag
gcggaaaagaaagaagtcttccatagactggctgtcttagtcagggtttc
tattcctgcacaaaatatcatgatcaagaagcaaattggggaggaaaggg
tttattcagcttacatttctgcattgctgtttatcaccaaaggaagtcag
gactggaactcacacatggaaggaacctggagtcaggagctgatgcagag
gtcatggagggatgctgcttactggcctgcttcccctggcttgctcagat
tggtttcttatacaacccaggactaccagcccagggatggcaccacccac
aatgcccctccccctggtcttgatcactaattgagaaaatgccttacagc
tgggtctcatggagacatttcctcaagggaggctcctttctctgggataa
ctccagtttgtgtcaagttgacacagaaaaccagccaatacactggcctt
ttggtttcctgcttctctccatcattgttcgatatagttcagtccacaaa
gatcctgtacaatcgtagctaagctagacggttgcaagaggcacctcggg
atccaggaagactgtggtgaggtttatcatgttagtagctttgggttgca
gcatgggccgtcccagagggcatacctgccagggtgacagagctcagctt
ttctcagggcaacgaccatgatggaagagaaagcaccaagaagaaggagc
agacagcagctgtgtgctctaccccagacctatggggggaactcatctca
gtgactgttgggccgggtacacattgtgtcctcaatactatgctgaagaa
gaaacaacgtacagagagcaggtcactccctccacgagctaaaggttccc
ctgagatcaggttacatacatttagcacca
gaattcattcatttttctaatagttgaagaaactccagaaatcaatccta
aacataatcaaaaagatgttgtagaattttgcttttcaaactatgatgct
ctgttgtaagcagctctaaattggtctgaagttactgtctgaagcccctg
tgatttgtgggtcctcacacacagacaagtgtgcaagagcctctgccctg
tggcgtgtggtggttctgactgcttcagcatttccgggaagaggagccca
ctcatcccacagtcgccttcccgtcagatggtgccagcaggtttccctgg
acaaactacaccttcccactttgggcctacttatatcaatgggtttgcag
agtaaacctaacctttccacctactttttaaattttttttttttaagatt
tatttattttatttatctgagtacactgatggttgtgagccaccatgaag
ttgctgggaattgaactcagaacctctgaaagaacagtcagtgctcttaa
ccgctgagccatctttgcagcctccacccactttttaaaagcccattgaa
cacctgtacttcttgtatcccctttggcctctaaaagactaaaacttagg
cttctccagcctctcatccagttttgttgggtggctattttgtcatctgt
gcttttactaccccccagaaatctctctcatgagggctctgtagagtggt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38234170_38235299
seq2: B6Ng01-336L12.b_47_1176

seq1  GAATTCCACACCTCTATTGCTTTCCCATTTTAGAAGTTTAAAGAGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCTCTATTGCTTTCCCATTTTAGAAGTTTAAAGAGAAGTT  50

seq1  AAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATAT  100

seq1  TGGTAAGTGTTTCTTTGTTTCTTTCTGATCCTGGTGTCTTTTTAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTGTTTCTTTGTTTCTTTCTGATCCTGGTGTCTTTTTAAATAAA  150

seq1  ACCTATTTGGACACACTCTCATTTTTTTTCCAAGAAAATGTTGTTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTGGACACACTCTCATTTTTTTTCCAAGAAAATGTTGTTTCTTC  200

seq1  TTCTTCCTCCTCCTCTCCCTCCCCCTCTCCCTCTTCTAACCTTATCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCCTCCTCTCCCTCCCCCTCTCCCTCTTCTAACCTTATCCAAG  250

seq1  GCGGAAAAGAAAGAAGTCTTCCATAGACTGGCTGTCTTAGTCAGGGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAAAGAAAGAAGTCTTCCATAGACTGGCTGTCTTAGTCAGGGTTTC  300

seq1  TATTCCTGCACAAAATATCATGATCAAGAAGCAAATTGGGGAGGAAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGCACAAAATATCATGATCAAGAAGCAAATTGGGGAGGAAAGGG  350

seq1  TTTATTCAGCTTACATTTCTGCATTGCTGTTTATCACCAAAGGAAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGCTTACATTTCTGCATTGCTGTTTATCACCAAAGGAAGTCAG  400

seq1  GACTGGAACTCACACATGGAAGGAACCTGGAGTCAGGAGCTGATGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAACTCACACATGGAAGGAACCTGGAGTCAGGAGCTGATGCAGAG  450

seq1  GTCATGGAGGGATGCTGCTTACTGGCCTGCTTCCCCTGGCTTGCTCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAGGGATGCTGCTTACTGGCCTGCTTCCCCTGGCTTGCTCAGAT  500

seq1  TGGTTTCTTATACAACCCAGGACTACCAGCCCAGGGATGGCACCACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTATACAACCCAGGACTACCAGCCCAGGGATGGCACCACCCAC  550

seq1  AATGCCCCTCCCCCTGGTCTTGATCACTAATTGAGAAAATGCCTTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCTCCCCCTGGTCTTGATCACTAATTGAGAAAATGCCTTACAGC  600

seq1  TGGGTCTCATGGAGACATTTCCTCAAGGGAGGCTCCTTTCTCTGGGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCATGGAGACATTTCCTCAAGGGAGGCTCCTTTCTCTGGGATAA  650

seq1  CTCCAGTTTGTGTCAAGTTGACACAGAAAACCAGCCAATACACTGGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTTGTGTCAAGTTGACACAGAAAACCAGCCAATACACTGGCCTT  700

seq1  TTGGTTTCCTGCTTCTCTCCATCATTGTTCGATATAGTTCAGTCCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCCTGCTTCTCTCCATCATTGTTCGATATAGTTCAGTCCACAAA  750

seq1  GATCCTGTACAATCGTAGCTAAGCTAGACGGTTGCAAGAGGCACCTCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTACAATCGTAGCTAAGCTAGACGGTTGCAAGAGGCACCTCGGG  800

seq1  ATCCAGGAAGACTGTGGTGAGGTTTATCATGTTAGTAGCTTTGGGTTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGAAGACTGTGGTGAGGTTTATCATGTTAGTAGCTTTGGGTTGCA  850

seq1  GCAT-GGCCGTCCCAGAGGGCATACCTGCCAGGGTGACAGAGCTCAGCTT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCCGTCCCAGAGGGCATACCTGCCAGGGTGACAGAGCTCAGCTT  900

seq1  TTCTCAAGGCAACGACCATGATGGAAGAGAAAGCACCAAGAAGAAGGAGC  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGGCAACGACCATGATGGAAGAGAAAGCACCAAGAAGAAGGAGC  950

seq1  AGACAGCAGCTGTGTGCTCTACCCCAGACCTAT-GGGGGAACTCATCTCA  998
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGACAGCAGCTGTGTGCTCTACCCCAGACCTATGGGGGGAACTCATCTCA  1000

seq1  GTGACTGTT-GGCCGGGTACACATTGTGCCCTCAATACTATGCTGAAG-A  1046
      ||||||||| |||||||||||||||||| ||||||||||||||||||| |
seq2  GTGACTGTTGGGCCGGGTACACATTGTGTCCTCAATACTATGCTGAAGAA  1050

seq1  GAAACAAACGTACAGAGAAGCAGGTCACTTCCCTCCACGAGCTAAAGGTT  1096
      ||||| ||||||||||| |||||||||| |||||||||||||||||||||
seq2  GAAAC-AACGTACAGAG-AGCAGGTCAC-TCCCTCCACGAGCTAAAGGTT  1097

seq1  CCCCTGAGATCAGTTTACATACATTTAAGCACCA  1130
      ||||||||||||| |||||||||||| |||||||
seq2  CCCCTGAGATCAGGTTACATACATTT-AGCACCA  1130

seq1: chr19_38271740_38272442
seq2: B6Ng01-336L12.g_64_766 (reverse)

seq1  CACACCACTCTACAGAGCCCTCATGAGAGAGATTTCTGGGGGGTAGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACTCTACAGAGCCCTCATGAGAGAGATTTCTGGGGGGTAGTAAA  50

seq1  AGCACAGATGACAAAATAGCCACCCAACAAAACTGGATGAGAGGCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGATGACAAAATAGCCACCCAACAAAACTGGATGAGAGGCTGGAG  100

seq1  AAGCCTAAGTTTTAGTCTTTTAGAGGCCAAAGGGGATACAAGAAGTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAGTTTTAGTCTTTTAGAGGCCAAAGGGGATACAAGAAGTACAG  150

seq1  GTGTTCAATGGGCTTTTAAAAAGTGGGTGGAGGCTGCAAAGATGGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAATGGGCTTTTAAAAAGTGGGTGGAGGCTGCAAAGATGGCTCAG  200

seq1  CGGTTAAGAGCACTGACTGTTCTTTCAGAGGTTCTGAGTTCAATTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTAAGAGCACTGACTGTTCTTTCAGAGGTTCTGAGTTCAATTCCCAG  250

seq1  CAACTTCATGGTGGCTCACAACCATCAGTGTACTCAGATAAATAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCATGGTGGCTCACAACCATCAGTGTACTCAGATAAATAAAATAA  300

seq1  ATAAATCTTAAAAAAAAAAAATTTAAAAAGTAGGTGGAAAGGTTAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTAAAAAAAAAAAATTTAAAAAGTAGGTGGAAAGGTTAGGTTT  350

seq1  ACTCTGCAAACCCATTGATATAAGTAGGCCCAAAGTGGGAAGGTGTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAAACCCATTGATATAAGTAGGCCCAAAGTGGGAAGGTGTAGTT  400

seq1  TGTCCAGGGAAACCTGCTGGCACCATCTGACGGGAAGGCGACTGTGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGGAAACCTGCTGGCACCATCTGACGGGAAGGCGACTGTGGGAT  450

seq1  GAGTGGGCTCCTCTTCCCGGAAATGCTGAAGCAGTCAGAACCACCACACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGCTCCTCTTCCCGGAAATGCTGAAGCAGTCAGAACCACCACACG  500

seq1  CCACAGGGCAGAGGCTCTTGCACACTTGTCTGTGTGTGAGGACCCACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGCAGAGGCTCTTGCACACTTGTCTGTGTGTGAGGACCCACAAA  550

seq1  TCACAGGGGCTTCAGACAGTAACTTCAGACCAATTTAGAGCTGCTTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGGCTTCAGACAGTAACTTCAGACCAATTTAGAGCTGCTTACAA  600

seq1  CAGAGCATCATAGTTTGAAAAGCAAAATTCTACAACATCTTTTTGATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATCATAGTTTGAAAAGCAAAATTCTACAACATCTTTTTGATTAT  650

seq1  GTTTAGGATTGATTTCTGGAGTTTCTTCAACTATTAGAAAAATGAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGATTGATTTCTGGAGTTTCTTCAACTATTAGAAAAATGAATGAA  700

seq1  TTC  703
      |||
seq2  TTC  703