BAC Information

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BAC

Clone NameB6Ng01-339P12
Chromosome19 (Build37)
Map Location 5,689,441 - 5,842,947
singlet/doubletdoublet
Overlap geneMap3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik
Upstream geneGm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3
Downstream gene1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339P12.bB6Ng01-339P12.g
ACCGA123817GA123818
length1,093612
definitionB6Ng01-339P12.b B6Ng01-339P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,841,846 - 5,842,947)(5,689,441 - 5,690,051)
sequence
gaattccaatgctgctatctaaaggaatttcatatgggagtcatgcctta
tacaacacatacaggaatttaatgtgtgagccatgccttcaaaacacatc
ttgaatttctggaattggccagaagacaacagggtttgcttatttaacct
ttcaaatcagtcattgtgacaaggggacagggtcttgcgcttgctatgag
atcattgtgatgcttgtagaaacctcatgagtgctttgccactgaataca
tccattgtgggtttggcttgaatggtgcttaaaaaccatccctgagcaga
ggggaagctgttaaactgtcagtcaaagcagtttgggaaataaaagagac
tgggccctgggtcatcttactagataacactttgtaaaaattggttctga
aaaccctgtttatttgcatatttgtgaaaaccctgtatatgtggttgttt
tgtgagtgtgcttaaaagtggtgtgaccagggcaagatcgctcattggaa
cagctgtgtggaatggggaaatgtgaagaaagctgtaactgcaggttggt
cgcacacgcttctctgtactaaagtgttcagtgtacaaacccactaacca
ttttcctcccctttacagcaaaataaaggtttgagattgaagcttcttag
aattgtcatggctgttacattctcgacctctgtcactttgccttcatata
gttaggcctagatgcactgcaccatggaagcagttagagcaggtctggtc
tgagcagcttgtcaactctctgggagggaagggctgctcactgtgagctg
acaatggctgcagacatgacactgagtcatgggataatggcactgcaggt
aagggagtattctgaacatgatctagaacattcccaggttgtattccaaa
tagtatggtttttagtttggggaaaatgtcttaatatggtatgagctttt
catattttccacttcttaaaagctggtgtgggcctgagatttcagtctgt
acatgcaaattctgtctgcttgaggagctggccttagctatttttgattc
tctctctgtggtacatgactaagatttaccatgggagggtgtg
gaattcagacacaaggtattcttctctgtctttgcagagatccacttcga
ccgtgagcagaggagcacctaacgtaaggcttagagttgtgccggtgtgt
ttgggggcgggggaggcgggaggaactacctggcccgccttctacctctc
ttggccaacctccccgggaactcccgtgcacagctgccgggagcctccgg
gaggggagcggtgcaacccgcccacgtcatctgatgctgtttcctgcagg
agggagaagagcggaaaaaagtgaaactccaccctccacctctgcctccc
gcccccggggccaaagtacaaagggaggaggaagaagggaccggggtcgg
agctgtcggggcccaaggcactagcccaagaagaggtagcttcggctcaa
ctggggactttctcttacctcttgtgcctggagacaacaaccagagtccg
ggcgctgaccctggcaggccccaccttacggtaggcgggcgctgaagcca
ggttcccaggactacttcggaactgagggactctgctgctccaattcagc
catggtgaggcgccggaggccagtgggccccacccctccagcctgaccac
actgcccttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5841846_5842947
seq2: B6Ng01-339P12.b_51_1143 (reverse)

seq1  CACACCCTTCCCATGGTAAAAAACCTTAGTCATGTACCAAAAAAAAAAAA  50
      ||||||| |||||||||   ||| ||||||||||||||      | | | 
seq2  CACACCC-TCCCATGGT---AAATCTTAGTCATGTACC------ACAGAG  40

seq1  AAAAAACCAAAAATAGCCAAAGCCCAGCTCCTCAGGCAGACAGAA-TTGC  99
      | | || ||||||||| | ||| ||||||||||| |||||||||| ||||
seq2  AGAGAATCAAAAATAG-CTAAGGCCAGCTCCTCAAGCAGACAGAATTTGC  89

seq1  ATGTACAGACTGAAATCTCAAGCCCACACCAGCTTTTAAG-AGT-GAAAA  147
      |||||||||||||||||||| ||||||||||||||||||| ||| |||||
seq2  ATGTACAGACTGAAATCTCAGGCCCACACCAGCTTTTAAGAAGTGGAAAA  139

seq1  TATGAAAAGCTCATACCATATTAAGACATTTTCCCCAAACTAAAAAACCA  197
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATGAAAAGCTCATACCATATTAAGACATTTTCCCCAAACT-AAAAACCA  188

seq1  TACTATTTGGAATACAACCTGGGAATGTTCTAGATCATGTTCAGAATACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTGGAATACAACCTGGGAATGTTCTAGATCATGTTCAGAATACT  238

seq1  CCCTTACCTGCAGTGCCATTATCCCATGACTCAGTGTCATGTCTGCAGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCTGCAGTGCCATTATCCCATGACTCAGTGTCATGTCTGCAGCC  288

seq1  ATTGTCAGCTCACAGTGAGCAGCCCTTCCCTCCCAGAGAGTTGACAAGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGCTCACAGTGAGCAGCCCTTCCCTCCCAGAGAGTTGACAAGCT  338

seq1  GCTCAGACCAGACCTGCTCTAACTGCTTCCATGGTGCAGTGCATCTAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACCAGACCTGCTCTAACTGCTTCCATGGTGCAGTGCATCTAGGC  388

seq1  CTAACTATATGAAGGCAAAGTGACAGAGGTCGAGAATGTAACAGCCATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATATGAAGGCAAAGTGACAGAGGTCGAGAATGTAACAGCCATGA  438

seq1  CAATTCTAAGAAGCTTCAATCTCAAACCTTTATTTTGCTGTAAAGGGGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAAGAAGCTTCAATCTCAAACCTTTATTTTGCTGTAAAGGGGAG  488

seq1  GAAAATGGTTAGTGGGTTTGTACACTGAACACTTTAGTACAGAGAAGCGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGTTAGTGGGTTTGTACACTGAACACTTTAGTACAGAGAAGCGT  538

seq1  GTGCGACCAACCTGCAGTTACAGCTTTCTTCACATTTCCCCATTCCACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGACCAACCTGCAGTTACAGCTTTCTTCACATTTCCCCATTCCACAC  588

seq1  AGCTGTTCCAATGAGCGATCTTGCCCTGGTCACACCACTTTTAAGCACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCCAATGAGCGATCTTGCCCTGGTCACACCACTTTTAAGCACAC  638

seq1  TCACAAAACAACCACATATACAGGGTTTTCACAAATATGCAAATAAACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAACAACCACATATACAGGGTTTTCACAAATATGCAAATAAACAG  688

seq1  GGTTTTCAGAACCAATTTTTACAAAGTGTTATCTAGTAAGATGACCCAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGAACCAATTTTTACAAAGTGTTATCTAGTAAGATGACCCAGG  738

seq1  GCCCAGTCTCTTTTATTTCCCAAACTGCTTTGACTGACAGTTTAACAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTCTCTTTTATTTCCCAAACTGCTTTGACTGACAGTTTAACAGCT  788

seq1  TCCCCTCTGCTCAGGGATGGTTTTTAAGCACCATTCAAGCCAAACCCACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGCTCAGGGATGGTTTTTAAGCACCATTCAAGCCAAACCCACA  838

seq1  ATGGATGTATTCAGTGGCAAAGCACTCATGAGGTTTCTACAAGCATCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTATTCAGTGGCAAAGCACTCATGAGGTTTCTACAAGCATCACA  888

seq1  ATGATCTCATAGCAAGCGCAAGACCCTGTCCCCTTGTCACAATGACTGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCATAGCAAGCGCAAGACCCTGTCCCCTTGTCACAATGACTGAT  938

seq1  TTGAAAGGTTAAATAAGCAAACCCTGTTGTCTTCTGGCCAATTCCAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGTTAAATAAGCAAACCCTGTTGTCTTCTGGCCAATTCCAGAAA  988

seq1  TTCAAGATGTGTTTTGAAGGCATGGCTCACACATTAAATTCCTGTATGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATGTGTTTTGAAGGCATGGCTCACACATTAAATTCCTGTATGTG  1038

seq1  TTGTATAAGGCATGACTCCCATATGAAATTCCTTTAGATAGCAGCATTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAGGCATGACTCCCATATGAAATTCCTTTAGATAGCAGCATTGG  1088

seq1  AATTC  1102
      |||||
seq2  AATTC  1093

seq1: chr19_5689441_5690051
seq2: B6Ng01-339P12.g_69_680

seq1  GAATTCAGACACAAGG-ATTCTTCTCTGTCTTTGCAGAGATCCACTTCGA  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTCAGACACAAGGTATTCTTCTCTGTCTTTGCAGAGATCCACTTCGA  50

seq1  CCGTGAGCAGAGGAGCACCTAACGTAAGGCTTAGAGTTGTGCCGGTGTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAGCAGAGGAGCACCTAACGTAAGGCTTAGAGTTGTGCCGGTGTGT  100

seq1  TTGGGGGCGGGGGAGGCGGGAGGAACTACCTGGCCCGCCTTCTACCTCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCGGGGGAGGCGGGAGGAACTACCTGGCCCGCCTTCTACCTCTC  150

seq1  TTGGCCAACCTCCCCGGGAACTCCCGTGCACAGCTGCCGGGAGCCTCCGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAACCTCCCCGGGAACTCCCGTGCACAGCTGCCGGGAGCCTCCGG  200

seq1  GAGGGGAGCGGTGCAACCCGCCCACGTCATCTGATGCTGTTTCCTGCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGCGGTGCAACCCGCCCACGTCATCTGATGCTGTTTCCTGCAGG  250

seq1  AGGGAGAAGAGCGGAAAAAAGTGAAACTCCACCCTCCACCTCTGCCTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGAGCGGAAAAAAGTGAAACTCCACCCTCCACCTCTGCCTCCC  300

seq1  GCCCCCGGGGCCAAAGTACAAAGGGAGGAGGAAGAAGGGACCGGGGTCGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGGGGCCAAAGTACAAAGGGAGGAGGAAGAAGGGACCGGGGTCGG  350

seq1  AGCTGTCGGGGCCCAAGGCACTAGCCCAAGAAGAGGTAGCTTCGGCTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCGGGGCCCAAGGCACTAGCCCAAGAAGAGGTAGCTTCGGCTCAA  400

seq1  CTGGGGACTTTCTCTTACCTCTTGTGCCTGGAGACAACAACCAGAGTCCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACTTTCTCTTACCTCTTGTGCCTGGAGACAACAACCAGAGTCCG  450

seq1  GGCGCTGACCCTGGCAGGCCCCACCTTACGGTAGGCGGGCGCTGAAGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGACCCTGGCAGGCCCCACCTTACGGTAGGCGGGCGCTGAAGCCA  500

seq1  GGTTCCCAGGACTACTTCGGAACTGAGGGACTCTGCTGCTCCAATTCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGGACTACTTCGGAACTGAGGGACTCTGCTGCTCCAATTCAGC  550

seq1  CATGGTGAGGCGCCGGAGGCCAGTGGGCCCCACCCCTCCAGCCTGACCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAGGCGCCGGAGGCCAGTGGGCCCCACCCCTCCAGCCTGACCAC  600

seq1  ACTGCCCTTGGT  611
      ||||||||||||
seq2  ACTGCCCTTGGT  612