BAC Information

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BAC

Clone NameB6Ng01-343B03
Chromosome19 (Build37)
Map Location 21,855,223 - 21,969,805
singlet/doubletdoublet
Overlap geneTmem2
Upstream geneTmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik
Downstream geneEG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343B03.bB6Ng01-343B03.g
ACCGA125948GA125949
length1,2451,142
definitionB6Ng01-343B03.b B6Ng01-343B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,968,585 - 21,969,805)(21,855,223 - 21,856,376)
sequence
gaattccaggagaaatcactctgaccaatttacttgccctaatagcttct
tcagagaatatatcatagaagcctaagttgcatgggtgttcacttaaatc
caaataacttgccttgactattccaagaaataggctgaggagatggagcc
tcgcagactcttctgtcctctgccttctgcagcatttctccatttctaag
cactctcttgcctttgtttcctattaaatgtcttctcatgctgtgcgctt
acctcagttgcacttcagttgaccttgacttgcatctgcaactggttgga
agcagtggaagacaatcacacaaaaggaaaatgtggaacaaacaaatttc
actatttcatatgtaaagcgccacttattgactttcaaaatatcttgcat
tgtttggaaatgtttggtctgagggctggcaaatggagaacagtggtaga
ctatttgcctttcatccatgaggcttgggttcaatccctggcactacaaa
aacaaaagtcatatgtatttgtacattcaaaatgtatttactacctatga
gagctggctgtcccgggttcaggtagaatccattacaatttttccattta
caggaaaatactttctttattttaaagactcttcttgtaacaacagaatc
gagtttgaacagttatgagaggggaagatgaagtgaaacttggaggatgg
cagatcgtgaagagtggcttccgttcacatagattatctcttgtaattat
ataccaaggaagataaaaagatatttgtgaaaatgaagacgtggaagtca
gagggcatccctgagaaaggatgctctgagaaagggaagaaaaggagaat
cgggaacacagattgctggatgaagtggaccgaaaggccactgctttata
gaaacccaagggaaatggtaagaatctaccagattccagaagatgagttg
agagtaaaatgatgtatcaaggtctaaattgacagactaatttagctatt
actcagttatttatcaaacagcagcctcagtgattccatgactgtatatt
ttttatgtctagtaaacacgtaaggcagcttgtgaataaagtcctgcttg
tcaacttgggtgaaagttccttgcctttggaaagggaacgcccataatca
tctcatatttatatacattcagctgtgaactatttcaaggtgttttgaac
gaacgcactcagcggaatgtgccatgagttgtgggaggatcatca
gaattcttaataaaaccactcgtgacatgccagacattcttggaaggact
ctcagcagtactctgtggcactttctgtcagctggagagggaagggaagg
agtggctgcagttggggaagccagagggcgggagatccctgtgtgtttcc
attgacaaagatgagtaagactgcagccaaggaaacgagtgttgctgggg
acccaagcaaactaacaatactaagatcttatcagcgtgtgaatgggaga
cccactgtacccggcttctttatgagggcggagggagggctcactggagg
gtgggctgcagaatcgattctgacattatttgctaaatcaggcaaaatag
agactggaaattggcgtaagaagtatcatgtttatttttctttattttat
tttattttattttattttatttttttgagacagggtctcactgtgtagcc
aaggctgctcccacactgctaagccagcatggctctccctgttactggcc
tgccattccacccagcaaaactgaaggcgggaagccaggcatggatttga
aagaagttggctttggctgttgaaaacagtctgctgctgggctaattgct
aagttttttcatccgtgagataaggtttaaaatgcttgatgaatatactg
gagtcaactacgtttccaactgataggcaaattactgaattaacactgcc
aacccaaaggtattttatactgtagtttgaaacaagctgtaactagatat
aaattatagcttagtcaagctggcttccgccatagatttccatttattgg
ctcttgtcagaatggaagcaggtgtgtgggcctgtagactgcctgctgct
ctgtgatacacggtccttgtcaaggcatctgcccctccccctcaaaggga
atcttttcactggctttggcttgtgactagagggatgagctgtctggtac
agggcatcactcagatggccttgtctgagattctctctcagccagcttcc
cttttactctgctgtccacaagtcactaggatcgggtggggggtggggca
tctcattctctgaacctatgaaagtcgctctttactgtctcattgtagag
aggtatattttcaatggaactgatgatgctccctctcctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21968585_21969805
seq2: B6Ng01-343B03.b_50_1294 (reverse)

seq1  TGATGA---TCCCACAAACCATGAC-CAATCCGCTGA-TGC--TCCTTCA  43
      ||||||   ||||||||  |||| | || |||||||| |||  || ||| 
seq2  TGATGATCCTCCCACAACTCATGGCACATTCCGCTGAGTGCGTTCGTTC-  49

seq1  AAAACACC-TAAAATAGT---CAGCTG-ATGT-TATAAAATAGAGATGA-  86
      |||||||| | |||||||   |||||| |||| ||||||   ||||||| 
seq2  AAAACACCTTGAAATAGTTCACAGCTGAATGTATATAAATATGAGATGAT  99

seq1  -ATAGGCGTT-CCTTTCCAAAGCCAAG--AC-TTCACCC-AGTTGAC-AG  129
       || |||||| ||||||||||| ||||  || ||||||| ||||||| ||
seq2  TATGGGCGTTCCCTTTCCAAAGGCAAGGAACTTTCACCCAAGTTGACAAG  149

seq1  CA-GACTTTATTCAC-AGCTGCCTTTACGTGTTTACTAGACAT-AAAAAT  176
      || |||||||||||| ||||||| ||||||||||||||||||| ||||||
seq2  CAGGACTTTATTCACAAGCTGCC-TTACGTGTTTACTAGACATAAAAAAT  198

seq1  ATACAGTCATGGAATCACTGAGGCTGCTGTTTGATAAATAACTGAGTAAT  226
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCATGGAATCACTGAGGCTGCTGTTTGATAAATAACTGAGTAAT  248

seq1  AGCTAAATTAGTCTGTCAATTTAGACCTTGATACATCATTTTACTCTCAA  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATTAGTCTGTCAATTTAGACCTTGATACATCATTTTACTCTCAA  298

seq1  CTCATCTTCTGGAATCTGGTAGATTCTTACCA-TTCCCTTGGGTTTCTAT  325
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCATCTTCTGGAATCTGGTAGATTCTTACCATTTCCCTTGGGTTTCTAT  348

seq1  AAAGCAGTGGCC-TTCGGTCCACTTCATCCAGCAATCTGTGTTCCCGATT  374
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTGGCCTTTCGGTCCACTTCATCCAGCAATCTGTGTTCCCGATT  398

seq1  CTCCTTTTCTTCCCTTTCTCAGAGCATCCTTTCTCAGGGATGCCCTCTGA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTTCCCTTTCTCAGAGCATCCTTTCTCAGGGATGCCCTCTGA  448

seq1  CTTCCACGTCTTCATTTTCACAAATATCTTTTTATCTTCCTTGGTATATA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACGTCTTCATTTTCACAAATATCTTTTTATCTTCCTTGGTATATA  498

seq1  ATTACAAGAGATAATCTATGTGAACGGAAGCCACTCTTCACGATCTGCCA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGAGATAATCTATGTGAACGGAAGCCACTCTTCACGATCTGCCA  548

seq1  TCCTCCAAGTTTCACTTCATCTTCCCCTCTCATAACTGTTCAAACTCGAT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGTTTCACTTCATCTTCCCCTCTCATAACTGTTCAAACTCGAT  598

seq1  TCTGTTGTTACAAGAAGAGTCTTTAAAATAAAGAAAGTATTTTCCTGTAA  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTACAAGAAGAGTCTTTAAAATAAAGAAAGTATTTTCCTGTAA  648

seq1  ATGGAAAAATTGTAATGGATTCTACCTGAACCCGGGACAGCCAGCTCTCA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAATTGTAATGGATTCTACCTGAACCCGGGACAGCCAGCTCTCA  698

seq1  TAGGTAGTAAATACATTTTGAATGTACAAATACATATGACTTTTGTTTTT  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGTAAATACATTTTGAATGTACAAATACATATGACTTTTGTTTTT  748

seq1  GTAGTGCCAGGGATTGAACCCAAGCCTCATGGATGAAAGGCAAATAGTCT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCCAGGGATTGAACCCAAGCCTCATGGATGAAAGGCAAATAGTCT  798

seq1  ACCACTGTTCTCCATTTGCCAGCCCTCAGACCAAACATTTCCAAACAATG  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTTCTCCATTTGCCAGCCCTCAGACCAAACATTTCCAAACAATG  848

seq1  CAAGATATTTTGAAAGTCAATAAGTGGCGCTTTACATATGAAATAGTGAA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATTTTGAAAGTCAATAAGTGGCGCTTTACATATGAAATAGTGAA  898

seq1  ATTTGTTTGTTCCACATTTTCCTTTTGTGTGATTGTCTTCCACTGCTTCC  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGTTCCACATTTTCCTTTTGTGTGATTGTCTTCCACTGCTTCC  948

seq1  AACCAGTTGCAGATGCAAGTCAAGGTCAACTGAAGTGCAACTGAGGTAAG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTTGCAGATGCAAGTCAAGGTCAACTGAAGTGCAACTGAGGTAAG  998

seq1  CGCACAGCATGAGAAGACATTTAATAGGAAACAAAGGCAAGAGAGTGCTT  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGCATGAGAAGACATTTAATAGGAAACAAAGGCAAGAGAGTGCTT  1048

seq1  AGAAATGGAGAAATGCTGCAGAAGGCAGAGGACAGAAGAGTCTGCGAGGC  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAGAAATGCTGCAGAAGGCAGAGGACAGAAGAGTCTGCGAGGC  1098

seq1  TCCATCTCCTCAGCCTATTTCTTGGAATAGTCAAGGCAAGTTATTTGGAT  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCTCAGCCTATTTCTTGGAATAGTCAAGGCAAGTTATTTGGAT  1148

seq1  TTAAGTGAACACCCATGCAACTTAGGCTTCTATGATATATTCTCTGAAGA  1174
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAACACCCATGCAACTTAGGCTTCTATGATATATTCTCTGAAGA  1198

seq1  AGCTATTAGGGCAAGTAAATTGGTCAGAGTGATTTCTCCTGGAATTC  1221
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTAGGGCAAGTAAATTGGTCAGAGTGATTTCTCCTGGAATTC  1245

seq1: chr19_21855223_21856376
seq2: B6Ng01-343B03.g_68_1209

seq1  GAATTCTTAATAAAACCACTCGTGACATGCCAGACATTCTTGGAAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATAAAACCACTCGTGACATGCCAGACATTCTTGGAAGGACT  50

seq1  CTCAGCAGTACTCTGTGGCACTTTCTGTCAGCTGGAGAGGGAAGGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTACTCTGTGGCACTTTCTGTCAGCTGGAGAGGGAAGGGAAGG  100

seq1  AGTGGCTGCAGTTGGGGAAGCCAGAGGGCGGGAGATCCCTGTGTGTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCAGTTGGGGAAGCCAGAGGGCGGGAGATCCCTGTGTGTTTCC  150

seq1  ATTGACAAAGATGAGTAAGACTGCAGCCAAGGAAACGAGTGTTGCTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAAGATGAGTAAGACTGCAGCCAAGGAAACGAGTGTTGCTGGGG  200

seq1  ACCCAAGCAAACTAACAATACTAAGATCTTATCAGCGTGTGAATGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGCAAACTAACAATACTAAGATCTTATCAGCGTGTGAATGGGAGA  250

seq1  CCCACTGTACCCGGCTTCTTTATGAGGGCGGAGGGAGGGCTCACTGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTACCCGGCTTCTTTATGAGGGCGGAGGGAGGGCTCACTGGAGG  300

seq1  GTGGGCTGCAGAATCGATTCTGACATTATTTGCTAAATCAGGCAAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGCAGAATCGATTCTGACATTATTTGCTAAATCAGGCAAAATAG  350

seq1  AGACTGGAAATTGGCGTAAGAAGTATCATGTTTATTTTTCTTTATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAAATTGGCGTAAGAAGTATCATGTTTATTTTTCTTTATTTTAT  400

seq1  TTTATTTTATTTTATTTTATTTTTTTGAGACAGGGTCTCACTGTGTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTTATTTTATTTTTTTGAGACAGGGTCTCACTGTGTAGCC  450

seq1  AAGGCTGCTCCCACACTGCTAAGCCAGCATGGCTCTCCCTGTTACTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCTCCCACACTGCTAAGCCAGCATGGCTCTCCCTGTTACTGGCC  500

seq1  TGCCATTCCACCCAGCAAAACTGAAGGCGGGAAGCCAGGCATGGATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCCACCCAGCAAAACTGAAGGCGGGAAGCCAGGCATGGATTTGA  550

seq1  AAGAAGTTGGCTTTGGCTGTTGAAAACAGTCTGCTGCTGGGCTAATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTGGCTTTGGCTGTTGAAAACAGTCTGCTGCTGGGCTAATTGCT  600

seq1  AAGTTTTTTCATCCGTGAGATAAGGTTTAAAATGCTTGATGAATATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTCATCCGTGAGATAAGGTTTAAAATGCTTGATGAATATACTG  650

seq1  GAGTCAACTACGTTTCCAACTGATAGGCAAATTACTGAATTAACACTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTACGTTTCCAACTGATAGGCAAATTACTGAATTAACACTGCC  700

seq1  AACCCAAAGGTATTTTATACTGTAGTTTGAAACAAGCTGTAACTAGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAGGTATTTTATACTGTAGTTTGAAACAAGCTGTAACTAGATAT  750

seq1  AAATTATAGCTTAGTCAAGCTGGCTTCCGCCATAGATTTCCATTTATTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAGCTTAGTCAAGCTGGCTTCCGCCATAGATTTCCATTTATTGG  800

seq1  CTCTTGTCAGAATGGAAGCAGGTGTGTGGGCCTGTAGACTGCCTGCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCAGAATGGAAGCAGGTGTGTGGGCCTGTAGACTGCCTGCTGCT  850

seq1  CTGTGATACACGGTCCTTGTCAAGGCATCTGCCCCTCCCCCTCAAAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATACACGGTCCTTGTCAAGGCATCTGCCCCTCCCCCTCAAAGGGA  900

seq1  ATCTTTTCACTGGCTTTGGCTTGTGACTAGAGGGATGAGCTGTCTGGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCACTGGCTTTGGCTTGTGACTAGAGGGATGAGCTGTCTGGTAC  950

seq1  AGGGCATCACTCAAGATGGCCTTGTCTGAGATTCTCTCTCAAGCCAGCTT  1000
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  AGGGCATCACTC-AGATGGCCTTGTCTGAGATTCTCTCTC-AGCCAGCTT  998

seq1  CCCTTTTACTCTGCTGTCCCAACAAGGTCAACCTAGGAATCGGGT-GGGG  1049
      |||||||||||||||||||  |||| ||||  ||||| ||||||| ||||
seq2  CCCTTTTACTCTGCTGTCC--ACAA-GTCA--CTAGG-ATCGGGTGGGGG  1042

seq1  GTGGGGCATCCGCATCTCTGAGACTATGAAAAGTCGCTC-TTACTGTCTC  1098
      ||||||||||    |||||||  ||||| |||||||||| ||||||||||
seq2  GTGGGGCATCTCATTCTCTGAACCTATG-AAAGTCGCTCTTTACTGTCTC  1091

seq1  CATTTGTAGAGAGGTATAATTTTCAAATGAGACTGTTGAATGCTCCCTCT  1148
         |||||||||||||| |||||| ||||  |||| || |||||||||||
seq2  --ATTGTAGAGAGGTAT-ATTTTC-AATGGAACTGATG-ATGCTCCCTCT  1136

seq1  CCTAAC  1154
      ||||||
seq2  CCTAAC  1142