BAC Information

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BAC

Clone NameB6Ng01-344C07
Chromosome19 (Build37)
Map Location 20,118,831 - 20,119,798
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb, LOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344C07.bB6Ng01-344C07.g
ACCGA126723GA126724
length1,0231,220
definitionB6Ng01-344C07.b B6Ng01-344C07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggttagctcttagccccattttttaatggggttattagatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgattcaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgactgtgtcttttgcctttcagaagctttgcaacttta
ttaggtcccgtttgttgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccagttagatttgaccttagtacaaggaaatatgaatggatcaattcac
attcttctacacgataactgccagttgtgtcagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccacaggtatgtgggttcatctctgggtctttatttctattccattgg
tctacttgtctgtcactataccagtaccattcagtttttatcacagttct
aattgggtttctgttgatgtgtaaaatatcttgacaacacttaggggaga
aaacactcattctacagttctttgggtgatgtggaggccagccttgtgaa
ggaaaaaagggggatggagagcaaggtgccacaggctctggtaaatcctc
agagttttttttttaaatttttattgattattttatttattgacatttcc
attgttatcctccttgctggtttcccctctgaaaacctcctattccaacc
cctctccatgtttctatgagcgtgctctccatccacccactctcacctca
ccaccctatactctagcatcaagccttcacaggaccaagtcctcccctcc
cattgatgccagataggccatccgttgctacatattcagctggagccatg
ggtccctccacgtgttttgtttg
gaattcagtaggaattcagtgagaaggttatctattcagtaccattcaaa
tttacttctagtagaagaatggagcctgcagagtgtttacttgggatagt
agccagtcttaaccaaacaagggaatacacaatggtctcgcaaataggtg
ggtttaccatgaaagagttagggaatccccctgagataggtttcttcact
aggcccaaagaaacagcataatcaggcatttactaagaactcctggtggt
gggtttaacaatagactagcattacacctggctcccttcttagtggcaga
ggcgtggtccctgccatcttttgatgtatacattccttttgtattgtgtc
actgcaactcagaggatgtatctcacctggtttctggtctctcttctgta
taaaaagttagatgcttgacttgaaaaattacattcagattctacacaac
ctcttgtgttgcttctgtctgtcattctttcgcagactccttgtccacct
gcaactagagacccgttctacacagacagggtccaagaaggtctgtggca
gagaatgccctcatctaaaagaggcaacactaagatcctctgagaaagcc
tctctctcctcctggcactcactcttagcctgaccaggattgtgcagacc
ccacccattctggactctgctttgtccttccagtctggcttgtagtggtg
ccagaacactctgagagggaggagtcagaggatatggaagcccagcttct
tccccaatatgcatgccacagaacaccagactaaagtttgttggaaagaa
gtttactttggatcttgattacattttacactctcgggttgtgtatggtg
ataacctctatgctggcagagttgtgaggtgtgtaggctaatacatggtg
agaaacaagtttgctcatttatattcaataagccctattaatgaagccaa
agggccagagagggtccaagctgatggcctgaccacttcccagtgtccca
ttgctaagaccagagccaggctacacatcatctggaatttcccacaggag
gatgaaggctaataagcaagcctgtatgaatatatgcactccaatatgga
cctaatcatagccatggaatgcaataaagataaggcaagcagtaattttc
cttacactcatgaatatatggttatgcatccttgtacaagaataccactt
tagggaaatatttttcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20118831_20119798
seq2: B6Ng01-344C07.g_337_1284

seq1  TACACCTGGCTCCCTTCTTAGTGGCAGAGGCGTGGTCCCTGCCATCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTGGCTCCCTTCTTAGTGGCAGAGGCGTGGTCCCTGCCATCTTTT  50

seq1  GATGTATACATTCCTTTTGTATTGTGTCACTGCAACTCAGAGGATGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATACATTCCTTTTGTATTGTGTCACTGCAACTCAGAGGATGTATC  100

seq1  TCACCTGGTTTCTGGTCTCTCTTCTGTATAAAAAGTTAGATGCTTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGTTTCTGGTCTCTCTTCTGTATAAAAAGTTAGATGCTTGACTT  150

seq1  GAAAAATTACATTCAGATTCTACACAACCTCTTGTGTTGCTTCTGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTACATTCAGATTCTACACAACCTCTTGTGTTGCTTCTGTCTGT  200

seq1  CATTCTTTCGCAGACTCCTTGTCCACCTGCAACTAGAGACCCGTTCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCGCAGACTCCTTGTCCACCTGCAACTAGAGACCCGTTCTACA  250

seq1  CAGACAGGGTCCAAGAAGGTCTGTGGCAGAGAATGCCCTCATCTAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGTCCAAGAAGGTCTGTGGCAGAGAATGCCCTCATCTAAAAGA  300

seq1  GGCAACACTAAGATCCTCTGAGAAAGCCTCTCTCTCCTCCTGGCACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACACTAAGATCCTCTGAGAAAGCCTCTCTCTCCTCCTGGCACTCAC  350

seq1  TCTTAGCCTGACCAGGATTGTGCAGACCCCACCCATTCTGGACTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCTGACCAGGATTGTGCAGACCCCACCCATTCTGGACTCTGCTT  400

seq1  TGTCCTTCCAGTCTGGCTTGTAGTGGTGCCAGAACACTCTGAGAGGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCCAGTCTGGCTTGTAGTGGTGCCAGAACACTCTGAGAGGGAGG  450

seq1  AGTCAGAGGATATGGAAGCCCAGCTTCTTCCCCAATATGCATGCCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGATATGGAAGCCCAGCTTCTTCCCCAATATGCATGCCACAGA  500

seq1  ACACCAGACTAAAGTTTGTTGGAAAGAAGTTTACTTTGGATCTTGATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGACTAAAGTTTGTTGGAAAGAAGTTTACTTTGGATCTTGATTAC  550

seq1  ATTTTACACTCTCGGGTTGTGTATGGTGATAACCTCTATGCTGGCAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACACTCTCGGGTTGTGTATGGTGATAACCTCTATGCTGGCAGAGT  600

seq1  TGTGAGGTGTGTAGGCTAATACATGGTGAGAAACAAGTTTTGCTCATTTA  650
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTGAGGTGTGTAGGCTAATACATGGTGAGAAACAAG-TTTGCTCATTTA  649

seq1  TATTCAATAAGCCCTATTAATGAAGCCAAAGGGCCAGAGAGGGTCCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATAAGCCCTATTAATGAAGCCAAAGGGCCAGAGAGGGTCCAAGC  699

seq1  TGATGGCCTGACCACTTCCCAGTGTCCCATTGCTAAAGACCAGAGCCAGG  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGATGGCCTGACCACTTCCCAGTGTCCCATTGCT-AAGACCAGAGCCAGG  748

seq1  CTACACATCCATCCTGGAATTTCCCACAAGGAGGATGAAGGCTAAATAAA  800
      |||||||| ||| |||||||||||||| |||||||||||||||||   ||
seq2  CTACACAT-CAT-CTGGAATTTCCCAC-AGGAGGATGAAGGCTAA--TAA  793

seq1  GCAAGCCCTGTATG-ATATATGCACTCC-ATATGGAACTAAATCATAGCC  848
      ||||| |||||||| ||||||||||||| ||||||| || ||||||||||
seq2  GCAAG-CCTGTATGAATATATGCACTCCAATATGGACCT-AATCATAGCC  841

seq1  CAGTGAAAGGCATTAAAAGATAAAGCACAGCAGTAATATCTCCTACAACT  898
         || || ||| | |||||||| ||| ||||||||| | ||||   |||
seq2  --ATGGAATGCAAT-AAAGATAAGGCA-AGCAGTAAT-TTTCCTTACACT  886

seq1  CAATGATATTATTTGTTATATCAATTTCTTTGTGACCAAGATACCACTTT  948
      ||   ||||   | |||||  ||   || |||| || |  ||||||||||
seq2  CATGAATAT--ATGGTTAT-GCA---TCCTTGT-ACAAGAATACCACTTT  929

seq1  AAGTGAATAATTTTTCAGCC  968
       || |||  |||||||||||
seq2  -AGGGAAATATTTTTCAGCC  948