BAC Information

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BAC

Clone NameB6Ng01-344O06
Chromosome19 (Build37)
Map Location 6,147,892 - 6,263,465
singlet/doubletdoublet
Overlap geneEG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik
Upstream genePacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2
Downstream geneEhd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O06.bB6Ng01-344O06.g
ACCGA127259GA127260
length4711,072
definitionB6Ng01-344O06.b B6Ng01-344O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,147,892 - 6,148,368)(6,262,380 - 6,263,465)
sequence
agtaccattgtttgactagagggaggtgaggattccaaaaaacgaggaat
gagctcctgtaggcgatcagagactgtctgagtccttttgttggtcctgg
gcaatgcctccacccatcctgagaaagtgtctatcaagatcagaagatac
ctaatgcgtttgactgtggataaagtcaagttgccagtcagtcttgggag
agagcctctggcctggtggataggaaaaggggagttgtgatatctagagt
tgggggggaggtctgacatctgacagatttttacaagaggcagaaatagc
acttaagaaatgcaaatccgggggctggcgagatggctcagtggttaaga
gctccgactactcttccaaaggtcccgagttcgaatcccatcaaccatgt
ggtggctcacaaccatccgtaacaaaatctgatgccctcttctgaagtat
ctgaggacagctacagtgtac
gaattctgtctccatagagcagggaagcaccagccactttacccaaaggt
ggaaacagagccacaggacagaacttgctcagaagggctgatggcttggc
aggaaggcttggagtcgggagccttcagcagccttctggaggacagcctg
ggagctcttaccttgcacctagctggccttcggggcacaaggaggaagtg
gggccaccctgggccaagccttttgagccgttggcccagccctggttgcg
ttaatgattagcccactgccatcaatactgaccctaagaggggtccgaag
ggcagcagacctggactgtgccccagctggcagggcgggtccaggaagta
ccagactgggtcttcagctacccagtgccaccagaccctggccacccatg
ggcttcattggcttgacctcatgcctagtctgttggccctagctagccag
acagccaaactaggggatggggcacaaggaagtcctctcatgcttaatac
tcaggtctatgatgggggccaaaggaggagcgaccacagctaacttcagg
gggaaccagggatgcccaacaagtgatccttcccacaggcccacccactt
cctggcagtgctaccgagggtggctccccgtgaacaatgaacgtgggatg
gtcagcaggcatcttctggacaacacagctttgtcccagcataagaaagc
cactctctcaaaatggtgggaataggcctcaacctccccgagtgggacac
cctggacactgccacggctggcagactaacagatgttgccttaggtcaca
gagattcccaggacaggcctggagccctgcttcgctccagcctcaagaat
aaggctggagcctggggtctgacaggaatagaaccaaggaatggggtttg
atgcgactctcaggactcttcctctggggctgccaggcaacttcccccag
cttcacttggaagtagtgccagatgacagcacaggatggtaagtagtgaa
cccaagcctgtttgcatcagaagctgaaggtgagtgtggcgccttctgtg
cagaggtgtgtactgctgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6147892_6148368
seq2: B6Ng01-344O06.b_49_525

seq1  GAATTCAGTACCATTGTTTGACTAGAGGGAGGTGAGGATTCCAAAAAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACCATTGTTTGACTAGAGGGAGGTGAGGATTCCAAAAAACG  50

seq1  AGGAATGAGCTCCTGTAGGCGATCAGAGACTGTCTGAGTCCTTTTGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGCTCCTGTAGGCGATCAGAGACTGTCTGAGTCCTTTTGTTGG  100

seq1  TCCTGGGCAATGCCTCCACCCATCCTGAGAAAGTGTCTATCAAGATCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCAATGCCTCCACCCATCCTGAGAAAGTGTCTATCAAGATCAGA  150

seq1  AGATACCTAATGCGTTTGACTGTGGATAAAGTCAAGTTGCCAGTCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTAATGCGTTTGACTGTGGATAAAGTCAAGTTGCCAGTCAGTCT  200

seq1  TGGGAGAGAGCCTCTGGCCTGGTGGATAGGAAAAGGGGAGTTGTGATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGAGCCTCTGGCCTGGTGGATAGGAAAAGGGGAGTTGTGATATC  250

seq1  TAGAGTTGGGGGGGAGGTCTGACATCTGACAGATTTTTACAAGAGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGGGGGGGAGGTCTGACATCTGACAGATTTTTACAAGAGGCAGA  300

seq1  AATAGCACTTAAGAAATGCAAATCCGGGGGCTGGCGAGATGGCTCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACTTAAGAAATGCAAATCCGGGGGCTGGCGAGATGGCTCAGTGG  350

seq1  TTAAGAGCTCCGACTACTCTTCCAAAGGTCCCGAGTTCAAATCCCAGCAA  400
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  TTAAGAGCTCCGACTACTCTTCCAAAGGTCCCGAGTTCGAATCCCATCAA  400

seq1  CCATGTGGTGGCTCACAACCATCCGTAACAAAATCTGATGCCCTCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTGGCTCACAACCATCCGTAACAAAATCTGATGCCCTCTTCTG  450

seq1  AAGTATCTGAGGACAGCTACAGTGTAC  477
      |||||||||||||||||||||||||||
seq2  AAGTATCTGAGGACAGCTACAGTGTAC  477

seq1: chr19_6262380_6263465
seq2: B6Ng01-344O06.g_66_1137 (reverse)

seq1  TCTGCACGCAGTACACACCTCCTGCCACCAGGAGGCGCCACACTTCACCC  50
      |||||| ||||||||||||| ||||   ||| ||||||||||| ||||| 
seq2  TCTGCA-GCAGTACACACCT-CTGC--ACAGAAGGCGCCACAC-TCACCT  45

seq1  TCAGCCTTCTGATGCAAACAGGCTTTGGGTTCAACCTACTTACCATCCTG  100
      |||| |||||||||||||||||| |||||||||  |||||||||||||| 
seq2  TCAG-CTTCTGATGCAAACAGGC-TTGGGTTCA--CTACTTACCATCCT-  90

seq1  GTGCCTGTCATCTTGGCACTACTTCCAAGTGAAGCTGGGGGAAGTTGCCT  150
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTG-CTGTCATC-TGGCACTACTTCCAAGTGAAGCTGGGGGAAGTTGCCT  138

seq1  GGCAGCCCCAGAGGAAGAGTCCCTGAGAGTCCGCATCAAACCCCATTCCT  200
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  GGCAGCCCCAGAGGAAGAGT-CCTGAGAGT-CGCATCAAACCCCATTCCT  186

seq1  TGGTTCTATTCCTGTCAGACCCCAGGCTCCAGCCTTATTCTTGAGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTATTCCTGTCAGACCCCAGGCTCCAGCCTTATTCTTGAGGCTGG  236

seq1  AGCGAAGCAGGGCTCCAGGCCTGTCCTGGGAATCTCTGTGACCTAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGCAGGGCTCCAGGCCTGTCCTGGGAATCTCTGTGACCTAAGGCA  286

seq1  ACATCTGTTAGTCTGCCAGCCGTGGCAGTGTCCAGGGTGTCCCACTCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTTAGTCTGCCAGCCGTGGCAGTGTCCAGGGTGTCCCACTCGGG  336

seq1  GAGGTTGAGGCCTATTCCCACCATTTTGAGAGAGTGGCTTTCTTATGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGAGGCCTATTCCCACCATTTTGAGAGAGTGGCTTTCTTATGCTG  386

seq1  GGACAAAGCTGTGTTGTCCAGAAGATGCCTGCTGACCATCCCACGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGCTGTGTTGTCCAGAAGATGCCTGCTGACCATCCCACGTTCAT  436

seq1  TGTTCACGGGGAGCCACCCTCGGTAGCACTGCCAGGAAGTGGGTGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACGGGGAGCCACCCTCGGTAGCACTGCCAGGAAGTGGGTGGGCCT  486

seq1  GTGGGAAGGATCACTTGTTGGGCATCCCTGGTTCCCCCTGAAGTTAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGATCACTTGTTGGGCATCCCTGGTTCCCCCTGAAGTTAGCTG  536

seq1  TGGTCGCTCCTCCTTTGGCCCCCATCATAGACCTGAGTATTAAGCATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGCTCCTCCTTTGGCCCCCATCATAGACCTGAGTATTAAGCATGAG  586

seq1  AGGACTTCCTTGTGCCCCATCCCCTAGTTTGGCTGTCTGGCTAGCTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCTTGTGCCCCATCCCCTAGTTTGGCTGTCTGGCTAGCTAGGG  636

seq1  CCAACAGACTAGGCATGAGGTCAAGCCAATGAAGCCCATGGGTGGCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGACTAGGCATGAGGTCAAGCCAATGAAGCCCATGGGTGGCCAGG  686

seq1  GTCTGGTGGCACTGGGTAGCTGAAGACCCAGTCTGGTACTTCCTGGACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTGGCACTGGGTAGCTGAAGACCCAGTCTGGTACTTCCTGGACCC  736

seq1  GCCCTGCCAGCTGGGGCACAGTCCAGGTCTGCTGCCCTTCGGACCCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCAGCTGGGGCACAGTCCAGGTCTGCTGCCCTTCGGACCCCTCT  786

seq1  TAGGGTCAGTATTGATGGCAGTGGGCTAATCATTAACGCAACCAGGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCAGTATTGATGGCAGTGGGCTAATCATTAACGCAACCAGGGCTG  836

seq1  GGCCAACGGCTCAAAAGGCTTGGCCCAGGGTGGCCCCACTTCCTCCTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACGGCTCAAAAGGCTTGGCCCAGGGTGGCCCCACTTCCTCCTTGT  886

seq1  GCCCCGAAGGCCAGCTAGGTGCAAGGTAAGAGCTCCCAGGCTGTCCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGAAGGCCAGCTAGGTGCAAGGTAAGAGCTCCCAGGCTGTCCTCCA  936

seq1  GAAGGCTGCTGAAGGCTCCCGACTCCAAGCCTTCCTGCCAAGCCATCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGCTGAAGGCTCCCGACTCCAAGCCTTCCTGCCAAGCCATCAGC  986

seq1  CCTTCTGAGCAAGTTCTGTCCTGTGGCTCTGTTTCCACCTTTGGGTAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAGCAAGTTCTGTCCTGTGGCTCTGTTTCCACCTTTGGGTAAAG  1036

seq1  TGGCTGGTGCTTCCCTGCTCTATGGAGACAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTGCTTCCCTGCTCTATGGAGACAGAATTC  1072