BAC Information

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BAC

Clone NameB6Ng01-349N04
Chromosome1 (Build37)19 (Build37)
Map Location 18,734,302 - 18,735,53241,914,887 - 41,915,180
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCrispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
Downstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349N04.bB6Ng01-349N04.g
ACCGA130694GA130695
length1,2291,026
definitionB6Ng01-349N04.b B6Ng01-349N04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,734,302 - 18,735,532)(41,914,887 - 41,915,180)
sequence
gaattctattcaggcttcagatgatacactaaacatttagagacttacct
catatttgatttcttcacccacatacaaaacaaatcacttaattaattaa
ttccaataattaaaaagaaccatcttctctttgaaaccactttggcatct
tgcctcattcattactaaacttatctatatgttaggtacttcattggaca
aaaatgcttaagagtatctgcaattcaggaatatcatattgcttaaaaat
aaatttacatgtgagtgtgtgtgtacacacacaatcttacatcaggaatc
aaggaaagtactaaaacaacattcagtcagaattcaaagaacctgacaat
gcaatgatactttgatgccttttaaaaattctaaatgactgtctatacta
gctaaaagtcttttgatattagccacatctaagtatggaaaccatgtagc
atatctctaagaaaagcatgagaaagacacttccaaagccaactgattag
taagccttttcttttcttaatttttctatttgtgggaaagttttctaaaa
tattactaagacagataccgtatcttttctctctggaatgataatcagct
tcaggttactggttttgtttgtcttttttctttgatcaaaatattgtcag
tctcctgaactatactttccttttgaggtgtgtgtgctgaattaattctc
tacccaacctttattaattcattattaatacactatttgatccacaaggg
tttttcctagcctcacacagtgcctggtgtcagaaatcacaaaattcaag
tcttctgaatgagaactgagagaatttttaattttacattgctgatagat
atataagtccactgtggtaattgaggagcaccttgaatgaaggtgtaaag
cgtgaatggggccctgagtgaatggatattattgtcgaggtccagactgt
ctaagaacaatttgaattggtaaatctttccccaggtcagctcagagaac
aagcaaaagcttcttcaggctgtggatcagtgttgtcaatatacagatgt
catcaacacgacttccttctctagatgttgacaagcaaagaactgcttcc
ctgtagagactgctacatacacctagtaggttctcttctgtgctgtactt
taatcaaatggctagctttgtcctgccataagaatgttgctccatcaaat
ggcaaggggccaaaagagattctcttgtc

gaattcacccaagaggagtagatggtaggaaataatcaaactcagggctg
aaatcaaccaagtggaaacaaaaagaactatacaaagaatcaaccagtag
aaagacacaggctaacagaatggattcataaacattatccatcattctgc
tgtatacaagaaacacatttcagcaacaaagataatcattgccttagtat
aaaaggcaggaaaaagattttacaagcaaagggaccccaaaaataagcta
atatctaataaaatcgacttccaatagaaagtaatcaagagacagggaag
gacacttcatagttatcaaaggaaacttcactaagaggacattttaattc
tgaacatttataccccaaatgcaaggccactcagattcataaaagacata
ttactaaagcttaagttacacatataacctaacacattaatgtgggagat
ctctggggctaaagagatggctcagtgattaagaggactgactgtcctca
gaggtcctgagttcaatttccagcaactacatggtggttcacaaccatct
gtaatgagatctgatgccctcttctggtgtatctgaagatggttacagtg
tattcagatatattaaataaataaataaataaataaatttaaaaaaataa
tggaagacttcaacatcctattctcaccatggacagatcattaagacaga
aactaaacagagaaataacaaaactgactgtgatggttttatatgcttgg
ctcagagagtggcactatttggagttgtggccttgttggaaaaagtgtgt
cactgtgggcatggccttaagaccacctcctaagcctgtcttctcattac
agacttcagatgaagatgtagaactctcagttcatcctgcatcatgcctg
cctggatgctgccatgttactgccttgatcataatggactgaatatctga
catgtatgctagccccaaataaagagctgcccttggtcataaataaataa
ataagtaaacaaacccagagacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18734302_18735532
seq2: B6Ng01-349N04.b_46_1273

seq1  GAATTCTATTCAGGCTTCAGATGATACACTAAACATTTAGAGACTTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCAGGCTTCAGATGATACACTAAACATTTAGAGACTTACCT  50

seq1  CATATTTGATTTCTTCACCCACATACAAAACAAATCACTTAATTAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGATTTCTTCACCCACATACAAAACAAATCACTTAATTAATTAA  100

seq1  TTCCAATAATTAAAAAGAACCATCTTCTCTTTGAAACCACTTTGGCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATAATTAAAAAGAACCATCTTCTCTTTGAAACCACTTTGGCATCT  150

seq1  TGCCTCATTCATTACTAAACTTATCTATATGTTAGGTACTTCATTGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATTCATTACTAAACTTATCTATATGTTAGGTACTTCATTGGACA  200

seq1  AAAATGCTTAAGAGTATCTGCAATTCAGGAATATCATATTGCTTAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTAAGAGTATCTGCAATTCAGGAATATCATATTGCTTAAAAAT  250

seq1  AAATTTACATGTGAGTGTGTGTGTACACACACAATCTTACATCAGGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACATGTGAGTGTGTGTGTACACACACAATCTTACATCAGGAATC  300

seq1  AAGGAAAGTACTAAAACAACATTCAGTCAGAATTCAAAGAACCTGACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGTACTAAAACAACATTCAGTCAGAATTCAAAGAACCTGACAAT  350

seq1  GCAATGATACTTTGATGCCTTTTAAAAATTCTAAATGACTGTCTATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATACTTTGATGCCTTTTAAAAATTCTAAATGACTGTCTATACTA  400

seq1  GCTAAAAGTCTTTTGATATTAGCCACATCTAAGTATGGAAACCATGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGTCTTTTGATATTAGCCACATCTAAGTATGGAAACCATGTAGC  450

seq1  ATATCTCTAAGAAAAGCATGAGAAAGACACTTCCAAAGCCAACTGATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTAAGAAAAGCATGAGAAAGACACTTCCAAAGCCAACTGATTAG  500

seq1  TAAGCCTTTTCTTTTCTTAATTTTTCTATTTGTGGGAAAGTTTTCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTTTCTTTTCTTAATTTTTCTATTTGTGGGAAAGTTTTCTAAAA  550

seq1  TATTACTAAGACAGATACCGTATCTTTTCTCTCTGGAATGATAATCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTAAGACAGATACCGTATCTTTTCTCTCTGGAATGATAATCAGCT  600

seq1  TCAGGTTACTGGTTTTGTTTGTCTTTTTTCTTTGATCAAAATATTGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTACTGGTTTTGTTTGTCTTTTTTCTTTGATCAAAATATTGTCAG  650

seq1  TCTCCTGAACTATACTTTCCTTTTGAGGTGTGTGTGCTGAATTAATTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAACTATACTTTCCTTTTGAGGTGTGTGTGCTGAATTAATTCTC  700

seq1  TACCCAACCTTTATTAATTCATTATTAATACACTATTTGATCCACAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACCTTTATTAATTCATTATTAATACACTATTTGATCCACAAGGG  750

seq1  TTTTTCCTAGCCTCACACAGTGCCTGGTGTCAGAAATCACAAAATTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTAGCCTCACACAGTGCCTGGTGTCAGAAATCACAAAATTCAAG  800

seq1  TCTTCTGAATGAGAACTGAGAGAATTTTTAATTTTACATTGCTGATAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAATGAGAACTGAGAGAATTTTTAATTTTACATTGCTGATAGAT  850

seq1  ATATAAGTCCACTGTGGTAATTGAGGAGCACCTTGAATGAAGGTGTAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTCCACTGTGGTAATTGAGGAGCACCTTGAATGAAGGTGTAAAG  900

seq1  CGTGAATGGGGCCCTGAGTGAATGGATATTATTGTCGAGGTCCAGACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAATGGGGCCCTGAGTGAATGGATATTATTGTCGAGGTCCAGACTGT  950

seq1  CTAAGAACAATTTGAATTGGTAAATCCTTCCCCAGGTCAGGCTCAGAGAA  1000
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  CTAAGAACAATTTGAATTGGTAAATCTTTCCCCAGGTCA-GCTCAGAGAA  999

seq1  CAAGCAAAAGCTTCTTCCAGGCTGTGGATCAGTGTTGTCAATATACAGAT  1050
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAAGCAAAAGCTTCTT-CAGGCTGTGGATCAGTGTTGTCAATATACAGAT  1048

seq1  GTCATCAACCACGACTCCCTTCTCCTAGATGTTGACAGCCAAAG-ACTGC  1099
      |||||||| ||||||| |||||| |||||||||||||  ||||| |||||
seq2  GTCATCAA-CACGACTTCCTTCT-CTAGATGTTGACAAGCAAAGAACTGC  1096

seq1  TTCCCTGTAGAGACCTGCTACATACA-CTAGTTAGGTTCTCTTTCCTGTG  1148
      ||||||||||||| |||||||||||| |||| |||||||||||  |||||
seq2  TTCCCTGTAGAGA-CTGCTACATACACCTAG-TAGGTTCTCTT--CTGTG  1142

seq1  CTGTAC-TTAATCAAAGTGCTAAGCTTTTGGTTCTTGCATAGTGGATGTT  1197
      |||||| |||||||||  ||| ||||||  || ||  ||||  | |||||
seq2  CTGTACTTTAATCAAATGGCT-AGCTTT--GTCCTGCCATA-AGAATGTT  1188

seq1  GCTCCATCAA--TGCAAGGGGCAAAAAGA----TTCTTGT  1231
      ||||||||||   ||||||||| ||||||     ||||||
seq2  GCTCCATCAAATGGCAAGGGGCCAAAAGAGATTCTCTTGT  1228


seq1: chr19_41914887_41915180
seq2: B6Ng01-349N04.g_605_1075

seq1  TCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGCCCTCTTCTGGT  50
      |||||||||||||||||| |||||||          ||||||||||||||
seq2  TCACAACCATCTGTAATGAGATCTGA----------TGCCCTCTTCTGGT  40

seq1  GTGTCTGAAGACAGCTACAGTATACTCACATACATAAAATAAAT------  94
      || ||||||||  | |||||| || ||| ||| || ||||||||      
seq2  GTATCTGAAGATGGTTACAGTGTATTCAGATATATTAAATAAATAAATAA  90

seq1  --------CTTTAAAA----------------------------------  102
               |||||||                                  
seq2  ATAAATAAATTTAAAAAAATAATGGAAGACTTCAACATCCTATTCTCACC  140

seq1  -------------------AGAA---------ATAAATTGCA----GGGC  120
                         ||||         | ||||  ||     | |
seq2  ATGGACAGATCATTAAGACAGAAACTAAACAGAGAAATAACAAAACTGAC  190

seq1  GGTGGTGG-------CGCACGCCT---TTAATCCCAGTACTTGGAGGCAG  160
       ||| |||        ||  | ||     | |  || || ||||| |  |
seq2  TGTGATGGTTTTATATGCTTGGCTCAGAGAGTGGCACTATTTGGA-GTTG  239

seq1  AGGC-----------AGGCGGATTTCTGAGTTCGAGGCC-----------  188
       |||           | | |  |  ||| |  |  ||||           
seq2  TGGCCTTGTTGGAAAAAGTGTGTCACTGTGGGCATGGCCTTAAGACCACC  289

seq1  -----AGCCTG-------------GTCTACA----AAG----TGAATTC-  211
           ||||||             | || ||    |||     ||| || 
seq2  TCCTAAGCCTGTCTTCTCATTACAGACTTCAGATGAAGATGTAGAACTCT  339

seq1  CAGGACAGC------CAGGGCTACACAGA-GAAACCCTGTT---------  245
      |||  || |      || | || |   || |   || ||||         
seq2  CAGTTCATCCTGCATCATGCCTGCCTGGATGCTGCCATGTTACTGCCTTG  389

seq1  -TCAAAA--AACAAAACA----AAA------------CAAAACAAA----  272
       ||| ||   ||  || |    | |            | ||| |||    
seq2  ATCATAATGGACTGAATATCTGACATGTATGCTAGCCCCAAATAAAGAGC  439

seq1  ----------AATAAATAAATAAATAAGTAAA  294
                 |||||||||||||||||||||
seq2  TGCCCTTGGTCATAAATAAATAAATAAGTAAA  471


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