MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-350E21
Chromosome	19 (Build37)
Map Location	54,399,609 - 54,534,240
singlet/doublet	doublet
Overlap gene	none
Upstream gene	Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream gene	LOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a
Link	Open Mouse BAC browser

Click to get alignment info.

name	Mxi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Smndc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76479 MGI:1923729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dusp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240672 MGI:2685183
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins

name	LOC100043462 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 314 ESTs, 2 Proteins

name	Smc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13006 MGI:1339795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73713 MGI:1920963
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 2 Proteins

name	LOC100042979 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042979
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Pdcd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18569 MGI:107490
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310002J21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66360 MGI:1913610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 ESTs

name	Shoc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56392 MGI:1927197
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adra2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11551 MGI:87934
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043004 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043004
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Gpam (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14732 MGI:109162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tectb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21684 MGI:109574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gucy2g (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73707 MGI:106025
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acsl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433256 MGI:1919129
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zdhhc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66980 MGI:1914230
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Vti1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53611 MGI:1855699
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114520595 GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Max interacting protein 1 transcript_id : NM_001008542.2

name	Mxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114520598 GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Max interacting protein 1 transcript_id : NM_010847.3

name	Mxi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114520597 GeneID:17859 MGI:97245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Max interacting protein 1 transcript_id : NM_001008543.2

name	Smndc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130023 GeneID:76479 MGI:1923729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : survival motor neuron domain containing 1 transcript_id : NM_172429.2

name	Dusp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270568 GeneID:240672 MGI:2685183
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 84 ESTs, 5 Proteins product : dual specificity phosphatase 5 transcript_id : XM_140740.8

name	LOC100043462 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270570 GeneID:100043462
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 314 ESTs, 2 Proteins product : similar to nuclear transport factor 2 transcript_id : XM_001480585.1

name	Smc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:36031034 GeneID:13006 MGI:1339795
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : structural maintenace of chromosomes 3 transcript_id : NM_007790.2

name	Rbm20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270572 GeneID:73713 MGI:1920963
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 2 Proteins product : RNA binding motif protein 20 transcript_id : XM_001002314.2

name	Pdcd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356921 GeneID:18569 MGI:107490
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : programmed cell death 4 transcript_id : NM_011050.3

name	2310002J21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270574 GeneID:66360 MGI:1913610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 ESTs product : RIKEN cDNA 2310002J21 gene transcript_id : XM_001480596.1

name	Shoc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372584 GeneID:56392 MGI:1927197
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : soc-2 (suppressor of clear) homolog (C. elegans) transcript_id : NM_019658.5

name	Adra2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78711825 GeneID:11551 MGI:87934
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adrenergic receptor, alpha 2a transcript_id : NM_007417.2

name	LOC100043004 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270519 GeneID:100043004
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to cyclic nucleotide gated channel beta 1 transcript_id : XM_001479278.1

name	Gpam (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802122 GeneID:14732 MGI:109162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerol-3-phosphate acyltransferase, mitochondrial transcript_id : NM_008149.3

name	Tectb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130418 GeneID:21684 MGI:109574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tectorin beta transcript_id : NM_009348.3

name	Gucy2g (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487300 GeneID:73707 MGI:106025
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanylate cyclase 2g transcript_id : NM_001081076.1

name	Acsl5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992928 GeneID:433256 MGI:1919129
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA synthetase long-chain family member 5 transcript_id : NM_027976.2

name	Zdhhc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992949 GeneID:66980 MGI:1914230
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, DHHC domain containing 6 transcript_id : NM_025883.3

name	Zdhhc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75992951 GeneID:66980 MGI:1914230
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, DHHC domain containing 6 transcript_id : NM_001033573.1

name	Vti1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803384 GeneID:53611 MGI:1855699
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vesicle transport through interaction with t-SNAREs homolog 1A (yeast) transcript_id : NM_016862.3

name	Mxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114520596 GeneID:17859 MGI:97245
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : Max interactor 1 isoform b protein_id : NP_001008542.2

name	Mxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754766 CCDS:CCDS29901.1 GeneID:17859 MGI:97245
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : Max interactor 1 isoform a protein_id : NP_034977.1

name	Mxi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57242751 GeneID:17859 MGI:97245
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3 product : Max interactor 1 isoform c protein_id : NP_001008543.1

name	Smndc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369569 CCDS:CCDS29902.1 GeneID:76479 MGI:1923729
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0000245 - spliceosome assembly [Evidence IEA] codon_start : 1 product : survival motor neuron domain containing 1 protein_id : NP_766017.1

name	Dusp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270569 GeneID:240672 MGI:2685183
definition	codon_start : 1 product : dual specificity phosphatase 5 protein_id : XP_140740.4

name	LOC100043462 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270571 GeneID:100043462
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480635.1

name	Smc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:36031035 GeneID:13006 MGI:1339795
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0008278 - cohesin complex [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0000800 - lateral element [Evidence IDA]; GO:0016363 - nuclear matrix [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA]; GO:0000922 - spindle pole [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0045502 - dynein binding [Evidence ISS]; GO:0003777 - microtubule motor activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0051276 - chromosome organization and biogenesis [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0007126 - meiosis [Evidence IPI] [Evidence ISS]; GO:0007067 - mitosis [Evidence IEA]; GO:0007052 - mitotic spindle organization and biogenesis [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence ISS]; GO:0007062 - sister chromatid cohesion [Evidence ISS] codon_start : 1 product : chondroitin sulfate proteoglycan 6 protein_id : NP_031816.2

name	Rbm20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270573 GeneID:73713 MGI:1920963
definition	codon_start : 1 note : overriding stop codons product : similar to hCG2036763 protein_id : XP_001002314.2 transl_except : (pos:53895356..53895358,aa:OTHER)

name	Pdcd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625656 CCDS:CCDS29903.1 GeneID:18569 MGI:107490
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005829 - cytosol [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0007569 - cell aging [Evidence ISS]; GO:0043508 - negative regulation of JNK activity [Evidence ISS]; GO:0016481 - negative regulation of transcription [Evidence ISS] codon_start : 1 product : programmed cell death 4 protein_id : NP_035180.2

name	2310002J21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270575 GeneID:66360 MGI:1913610
definition	codon_start : 1 product : hypothetical protein LOC66360 protein_id : XP_001480646.1

name	Shoc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543701 CCDS:CCDS29904.1 GeneID:56392 MGI:1927197
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : Ras-binding protein SUR-8; suppressor of clear, C. elegans, homolog of product : soc-2 (suppressor of clear) homolog protein_id : NP_062632.2

name	Adra2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78711826 CCDS:CCDS29905.1 GeneID:11551 MGI:87934
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004935 - adrenoceptor activity [Evidence IMP]; GO:0004938 - alpha2-adrenergic receptor activity [Evidence TAS]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0042596 - fear response [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : subtype alpha2-C10; alpha2A-adrenergic receptor product : adrenergic receptor, alpha 2a protein_id : NP_031443.2

name	LOC100043004 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270520 GeneID:100043004
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479328.1

name	Gpam (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34536827 CCDS:CCDS29906.1 GeneID:14732 MGI:109162
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0044255 - cellular lipid metabolism [Evidence IEA]; GO:0006631 - fatty acid metabolism [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0008654 - phospholipid biosynthesis [Evidence IEA]; GO:0040018 - positive regulation of body size [Evidence IMP] codon_start : 1 product : glycerol-3-phosphate acyltransferase, mitochondrial protein_id : NP_032175.2

name	Tectb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7363457 CCDS:CCDS29907.1 GeneID:21684 MGI:109574
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA] [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IDA] [Evidence TAS]; GO:0048503 - GPI anchor binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence TAS] codon_start : 1 note : [b]-tectorin product : tectorin beta protein_id : NP_033374.2

name	Gucy2g (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487301 GeneID:73707 MGI:106025
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS] [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0004383 - guanylate cyclase activity [Evidence ISS] [Evidence IDA]; GO:0008528 - peptide receptor activity, G-protein coupled [Evidence IEA]; GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA] GO_process : GO:0006182 - cGMP biosynthesis [Evidence ISS] [Evidence IDA]; GO:0009190 - cyclic nucleotide biosynthesis [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : guanylate cyclase 2g protein_id : NP_001074545.1

name	Acsl5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58218988 CCDS:CCDS29908.1 GeneID:433256 MGI:1919129
definition	EC_number : 6.2.1.3 GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_process : GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : fatty acid Coenzyme A ligase, long chain 5 product : acyl-CoA synthetase long-chain family member 5 protein_id : NP_082252.1

name	Zdhhc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992952 CCDS:CCDS29909.1 GeneID:66980 MGI:1914230
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, DHHC domain containing 6 protein_id : NP_001028745.1

name	Zdhhc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75992950 CCDS:CCDS29909.1 GeneID:66980 MGI:1914230
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, DHHC domain containing 6 protein_id : NP_080159.3

name	Vti1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13928668 CCDS:CCDS29910.1 GeneID:53611 MGI:1855699
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : vesicle transport through interaction with t-SNAREs 1 homolog product : vesicle transport through interaction with t-SNAREs homolog 1A protein_id : NP_058558.1

name	LOC100042979 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042979
definition	number : 1 pseudo : _no_value

name	LOC100042979 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042979
definition	number : 2 pseudo : _no_value

clone name	MSMg01-345D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425N14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-542E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126E17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-350E21.b	B6Ng01-350E21.g
ACC	GA131020	GA131021
length	1,150	1,118
definition	B6Ng01-350E21.b	B6Ng01-350E21.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(54,533,082 - 54,534,240)	(54,399,609 - 54,400,717)
sequence	gaattctcttcttaaatctaagaacttactctagtgatttacctcttcct gacaaggctgattttagtggaaactgcataagatttaactctgaccagag tcctagtttgtccagcacactgccataaactcttgtaccataaaaagcaa taatgggctctttagagatgaggtctcatcttccagaaagtcagtaaaat accaccccccaaaatgttcactgctggaaaacatatgaggaactgaagag acatagtttcaaggttagtcaactatatttgttatttatgcatttttatt gtggttttatttatctaatcattacatgtagtgtggttcacaagaactga cctgaaagaaggatgatttgagaagaaaaatatgtttgggagagggaaag aagatgaggataatgggaagagtttgataaaatagcaccatttatatggt atatatgaaattataaatgagtaagtacaagattttcaagtataaaacac tgagccctcaaaaacattagccaaaccagtcataaaagtatagttgtggt ttttaagtgaaataatccaaacatatcaacaatatgatgagcagataaaa tgtggaatagtcaccttcggtctattaaatggacttcaaggctagtatca aagaaaatgacctcaaaacacagtaagaggaacagagatcacccaacaac ttacatagtatgacactgagtactggaactgtaagatttagaaagtcatg aagatgatgactcttccaatctggggacaattatgtgactaggacagggt ccccaggatctttcttggagaaaatgtctttacttcatagatgggcacaa cgtggcagcttgtgctttaatttaaactctatacaaatacttttgtatgt gttttttctacatatgtgcccatctccttctctcaatttaagatccataa tttttttttctatctgtgtattgctgtgcagcagtagcatcaaaggagac atgcataggtaatatccagtatgtattttgagtagtgatacgttatgatc agatttcacagcaacttagtagctatgagaacagtgttggacctgtaggt tctataagtcacctggatcagaaacccttggtgttcacctcatgggtata	gaattccagcatccacatgttgcttacaaccatatgtaactccagtccca ggagatttgacgccctcttctggcctctgtgggcattgcaattatgcggt gcacagctatacatgcacttacacacataaaacaaaaaataaaggaaaaa ttttatagagttgtgtaggctgaaacacatggctttaactggagagctta taggaattctgggggtgaatctgtgctcaccattgtctagacattactgt cacaacctagcctggctcactcctcattcactctgtccagagagaaccac gcatggcagcagacacacccttcctcaccttctcactttgtcctctgtgc tgctgcctgctgtccccccccccccaacgctatcctgtctcttctgaaac attccttgacctttcaagaccaattccatgggttccatctcctacggtat ggaacctgccctgacccactcatcaagtagggacagcttactattttcac tcacacactggttagattcctctgtgcacgtgcttgactgaattaatttt ttgtttgtttcacatctacctttttattagctccttgggagaaggggtta tctaatttttttggtacaatataaaagttatgacatcctacttgggggaa aaaaatctttcttcccactttcccaaattgttcttttcttttcttttctt tttcttttttaaaaggtaactttcttgaagttcagctgaaagaaaggttt tctcagtgtgaaattcttaaaggactttctgaaaggctagagggttggag attggtttatgagaaaggccagtggaaaatgtggtgggacgtagatgcat tttctcagaatagtttcctccaggagcggagtttgaaaggcagattgacc tcttcccagtaagtatccttagcaatgtcttcagggcttttcagaaaaca tgacacagcagtgtttcccatggctgggaaatacacagccttcttttttc ctcctcttttcatcccatccactatggccaggcagtaaataataatgact cccctttttcagtgagccacccagaagataaggaaatggaataccagcag gtcttttttatttttttt
quality values	Open. Hide. 58 41 32 29 58 54 58 62 62 62 62 62 62 62 62 62 47 62 62 62 54 62 62 62 62 62 62 62 62 56 56 44 29 32 38 62 59 59 62 62 62 62 62 49 49 49 62 62 62 62 62 59 62 59 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 59 62 54 54 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 59 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 59 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 62 46 52 62 62 62 62 62 62 62 62 62 62 62 52 62 38 37 62 62 62 62 62 62 62 62 58 58 54 58 58 58 58 58 54 58 58 58 58 58 58 54 58 54 49 58 58 58 58 54 58 58 58 58 58 58 58 54 58 54 54 58 54 54 54 58 58 52 54 58 58 54 47 48 52 52 52 58 52 58 58 54 47 58 58 54 52 54 52 51 50 53 58 58 51 49 58 42 58 58 58 58 52 54 49 51 54 50 41 41 58 49 51 43 58 46 52 53 58 40 51 51 58 49 40 58 58 46 43 58 58 49 50 51 41 58 48 58 54 53 54 53 41 51 49 58 58 53 58 58 58 50 50 58 46 21 41 48 49 40 58 49 50 50 30 50 41 52 39 53 58 53 51 30 49 51 49 43 50 39 58 34 41 50 52 42 42 41 42 40 43 44 49 49 50 50 52 40 44 41 38 52 53 42 45 52 53 50 30 40 41 51 51 49 26 53 32 49 45 51 49 52 40 40 49 53 52 46 39 25 46 37 54 44 42 41 53 54 33 42 40 40 32 52 52 45 45 34 33 23 52 41 32 52 37 25 52 42 53 46 30 34 18 25 32 32 34 41 53 52 42 33 21 13 53 36 52 34 40 53 34 32 45 28 35 26 31 52 53 34 39 25 49 36 28 31 22 20 22 27 22 22 19 21 34 28 51 30 33 22 46 25 29 22 21 51 51 46 31 30 31 28 30 34 51 45 31 31 31 33 33 24 31 31 31 37 31 32 47 37 37 24 35 26 31 31 28 31 26 24 10 32 32 34 38 22 32 28 31 32 37 48 41 26 34 30 46 31 37 46 31 30 38 37 31 24 19 23 39 31 48 26 31 21 26 31 46 46 28 41 17 35 32 37 21 33 26 48 48 48 48 9 21 25 29 33 33 37 31 31 32 25 31 31 38 38 24 17 23 33 27 27 18 33 31 17 23 31 34 21 20 22 44 34 26 21 13 31 30 20 30 21 29 18 33 20 48 48 48 39 39 37 39 20 6 4 9 18 17 29 17 10 31 21 32 29 19 31 12 17 19 18 10 17 9 10 32 15 10 10 30 13 34 22 34 25 13 37 10 34 14 31 19 11 12 20 22 17 28 10 29 10 5 22 6 27 20 24 18 23 15 15 11 10 14 28 20 28 12 16 20 40 33 24 9 16 25 14 30 10 6 7 25 6 3 3 3 3 15 16 14 14 31 8 12 9 6 20 18 21 31 19 10 11 14 24 12 22 25 18 22 27 22 13 13 7 9 11 8 24 16 14 5 3 14 18 6 4 10 4 8 6 5 4 4 4 4 6 5 5 3 2 4 3 1 2 6 4 5 5 7 7 4 11 4 11 7 6 7 8 7 18 16 18 20 11 17 26 13 6 16 14 7 7 8 5 1 3 1 1 4 4 5 23 5 6 5 1 11 20 25 5 5 14 5	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr19_54533082_54534240
seq2: B6Ng01-350E21.b_44_1193 (reverse)

seq1  TATACCCATGAGGTGAGCCACCCAAGGTTTCTGAT-CAGTGAACTAATAG  49
      ||||||||||||||||  |||| | |||||||||| |||   ||| ||||
seq2  TATACCCATGAGGTGA-ACACCAAGGGTTTCTGATCCAGGTGACTTATAG  49

seq1  AGACTAACAGCTC--ACACTGTTCTCATTAGCTTACTAAAGTTTGCCTGT  97
      | ||  |||| ||  |||||||||||| |||| |||| |||||   ||||
seq2  A-ACCTACAGGTCCAACACTGTTCTCA-TAGC-TACT-AAGTT--GCTGT  93

seq1  GAAAATCTGATTCATAACCTTATTCACTTACTCAAAATACATACTGGATA  147
      | |||||||| ||||||| |   |||| ||||||||||||||||||||||
seq2  G-AAATCTGA-TCATAACGT--ATCAC-TACTCAAAATACATACTGGATA  138

seq1  TTACCTATGCATGTCTCC-TTGATGCTACTGCTGGCACAGCAATACACAA  196
      |||||||||||||||||| |||||||||||||| |||||||||||||| |
seq2  TTACCTATGCATGTCTCCTTTGATGCTACTGCT-GCACAGCAATACAC-A  186

seq1  GATAAGAAAAAAAATTATGGATCTTAAATTGAGAGAAGGAGATGGGCACA  246
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAAAAAAATTATGGATCTTAAATTGAGAGAAGGAGATGGGCACA  236

seq1  TATGTAG-AAAAACACATACAAAAGTATTTGTATAGAGTTTAAATTAAAG  295
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGAAAAAACACATACAAAAGTATTTGTATAGAGTTTAAATTAAAG  286

seq1  CACAAGCTGCCACGTTGTGCCCATCTATGAAGTAAAGACATTTTCTCCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTGCCACGTTGTGCCCATCTATGAAGTAAAGACATTTTCTCCAA  336

seq1  GAAAGATCCTGGGGACCCTGTCCTAGTCACATAATTGTCCCCAGATTGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCCTGGGGACCCTGTCCTAGTCACATAATTGTCCCCAGATTGGA  386

seq1  AGAGTCATCATCTTCATGACTTTCTAAATCTTACAGTTCCAGTACTCAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATCATCTTCATGACTTTCTAAATCTTACAGTTCCAGTACTCAGT  436

seq1  GTCATACTATGTAAGTTGTTGGGTGATCTCTGTTCCTCTTACTGTGTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACTATGTAAGTTGTTGGGTGATCTCTGTTCCTCTTACTGTGTTTT  486

seq1  GAGGTCATTTTCTTTGATACTAGCCTTGAAGTCCATTTAATAGACCGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATTTTCTTTGATACTAGCCTTGAAGTCCATTTAATAGACCGAAG  536

seq1  GTGACTATTCCACATTTTATCTGCTCATCATATTGTTGATATGTTTGGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATTCCACATTTTATCTGCTCATCATATTGTTGATATGTTTGGAT  586

seq1  TATTTCACTTAAAAACCACAACTATACTTTTATGACTGGTTTGGCTAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACTTAAAAACCACAACTATACTTTTATGACTGGTTTGGCTAATG  636

seq1  TTTTTGAGGGCTCAGTGTTTTATACTTGAAAATCTTGTACTTACTCATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGGGCTCAGTGTTTTATACTTGAAAATCTTGTACTTACTCATTT  686

seq1  ATAATTTCATATATACCATATAAATGGTGCTATTTTATCAAACTCTTCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCATATATACCATATAAATGGTGCTATTTTATCAAACTCTTCCC  736

seq1  ATTATCCTCATCTTCTTTCCCTCTCCCAAACATATTTTTCTTCTCAAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTCATCTTCTTTCCCTCTCCCAAACATATTTTTCTTCTCAAATC  786

seq1  ATCCTTCTTTCAGGTCAGTTCTTGTGAACCACACTACATGTAATGATTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTTTCAGGTCAGTTCTTGTGAACCACACTACATGTAATGATTAG  836

seq1  ATAAATAAAACCACAATAAAAATGCATAAATAACAAATATAGTTGACTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAACCACAATAAAAATGCATAAATAACAAATATAGTTGACTAA  886

seq1  CCTTGAAACTATGTCTCTTCAGTTCCTCATATGTTTTCCAGCAGTGAACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAACTATGTCTCTTCAGTTCCTCATATGTTTTCCAGCAGTGAACA  936

seq1  TTTTGGGGGGTGGTATTTTACTGACTTTCTGGAAGATGAGACCTCATCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGGGTGGTATTTTACTGACTTTCTGGAAGATGAGACCTCATCTC  986

seq1  TAAAGAGCCCATTATTGCTTTTTATGGTACAAGAGTTTATGGCAGTGTGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCCCATTATTGCTTTTTATGGTACAAGAGTTTATGGCAGTGTGC  1036

seq1  TGGACAAACTAGGACTCTGGTCAGAGTTAAATCTTATGCAGTTTCCACTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAACTAGGACTCTGGTCAGAGTTAAATCTTATGCAGTTTCCACTA  1086

seq1  AAATCAGCCTTGTCAGGAAGAGGTAAATCACTAGAGTAAGTTCTTAGATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCCTTGTCAGGAAGAGGTAAATCACTAGAGTAAGTTCTTAGATT  1136

seq1  TAAGAAGAGAATTC  1159
      ||||||||||||||
seq2  TAAGAAGAGAATTC  1150

seq1: chr19_54399609_54400717
seq2: B6Ng01-350E21.g_67_1184

seq1  GAATTCCAGCATCCACATGTTGCTTACAACCATATGTAACTCCAGTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATCCACATGTTGCTTACAACCATATGTAACTCCAGTCCCA  50

seq1  GGAGATTTGACGCCCTCTTCTGGCCTCTGTGGGCATTGCAATTATGCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTGACGCCCTCTTCTGGCCTCTGTGGGCATTGCAATTATGCGGT  100

seq1  GCACAGCTATACATGCACTTACACACATAAAACAAAAAATAAAGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTATACATGCACTTACACACATAAAACAAAAAATAAAGGAAAAA  150

seq1  TTTTATAGAGTTGTGTAGGCTGAAACACATGGCTTTAACTGGAGAGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGAGTTGTGTAGGCTGAAACACATGGCTTTAACTGGAGAGCTTA  200

seq1  TAGGAATTCTGGGGGTGAATCTGTGCTCACCATTGTCTAGACATTACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTCTGGGGGTGAATCTGTGCTCACCATTGTCTAGACATTACTGT  250

seq1  CACAACCTAGCCTGGCTCACTCCTCATTCACTCTGTCCAGAGAGAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTAGCCTGGCTCACTCCTCATTCACTCTGTCCAGAGAGAACCAC  300

seq1  GCATGGCAGCAGACACACCCTTCCTCACCTTCTCACTTTGTCCTCTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAGCAGACACACCCTTCCTCACCTTCTCACTTTGTCCTCTGTGC  350

seq1  TGCTGCCTGCTGTCCCCCCCCCCCCAACGCTATCCTGTCTCTTCTGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGCTGTCCCCCCCCCCCCAACGCTATCCTGTCTCTTCTGAAAC  400

seq1  ATTCCTTGACCTTTCAAGACCAATTCCATGGGTTCCATCTCCTACGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGACCTTTCAAGACCAATTCCATGGGTTCCATCTCCTACGGTAT  450

seq1  GGAACCTGCCCTGACCCACTCATCAAGTAGGGACAGCTTACTATTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGCCCTGACCCACTCATCAAGTAGGGACAGCTTACTATTTTCAC  500

seq1  TCACACACTGGTTAGATTCCTCTGTGCACGTGCTTGACTGAATTAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACTGGTTAGATTCCTCTGTGCACGTGCTTGACTGAATTAATTTT  550

seq1  TTGTTTGTTTCACATCTACCTTTTTATTAGCTCCTTGGGAGAAGGGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTCACATCTACCTTTTTATTAGCTCCTTGGGAGAAGGGGTTA  600

seq1  TCTAATTTTTTTGGTACAATATAAAAGTTATGACATCCTACTTGGGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTTTTGGTACAATATAAAAGTTATGACATCCTACTTGGGGGAA  650

seq1  AAAAATCTTTCTTCCCACTTTCCCAAATTGTTCTTTTCTTTTCTTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTTCTTCCCACTTTCCCAAATTGTTCTTTTCTTTTCTTTTCTT  700

seq1  TTTCTTTTTTAAAAGGTAACTTTCTTGAAGTTCAGCTGAAAGAAAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTAAAAGGTAACTTTCTTGAAGTTCAGCTGAAAGAAAGGTTT  750

seq1  TCTCAGTGTGAAATTCTTAAAGGACTTTCTGAAAGGCTAGAGGGTTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTGAAATTCTTAAAGGACTTTCTGAAAGGCTAGAGGGTTGGAG  800

seq1  ATTGGTTTATGAGAAAGGCCAGTGGACAATGTGGTGGGACGTAGATGCAT  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTGGTTTATGAGAAAGGCCAGTGGAAAATGTGGTGGGACGTAGATGCAT  850

seq1  TTTCTCAGAATAGTTTCCTCCAGGAGCGGAGTTTG-AAGGCAGATTGACC  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTCTCAGAATAGTTTCCTCCAGGAGCGGAGTTTGAAAGGCAGATTGACC  900

seq1  -CTTCCCAGTAAGTATCCTTAGCAATGTCTTCAGGGCTTTTCAG-AAACA  947
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTTCCCAGTAAGTATCCTTAGCAATGTCTTCAGGGCTTTTCAGAAAACA  950

seq1  TGACACAGCAGTGTTTCCCATGGCTGGGAAATACACAGCCTTC-TTTTTC  996
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGACACAGCAGTGTTTCCCATGGCTGGGAAATACACAGCCTTCTTTTTTC  1000

seq1  CT-CTCTTTTCATCCCATCCACTATGG-CAGGCAGTAAATAATAATGACT  1044
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCCTCTTTTCATCCCATCCACTATGGCCAGGCAGTAAATAATAATGACT  1050

seq1  CCCC-TTTTCAGTGAGCCACCCAG-AGATAAAGAAAT-GAATACCAGGCA  1091
      |||| ||||||||||||||||||| |||||| ||||| |||||||||   
seq2  CCCCTTTTTCAGTGAGCCACCCAGAAGATAAGGAAATGGAATACCAGCAG  1100

seq1  GTCTTTTTTTTTTTTTTT  1109
      ||||||||| ||||||||
seq2  GTCTTTTTTATTTTTTTT  1118

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information