BAC Information

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BAC

Clone NameMSMg01-049H05
Chromosome19 (Build37)
Map Location 17,821,180 - 17,821,725
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049H05.T7 (MSMg01no049_h05.b1)MSMg01-049H05.TJ (MSMg01no049_h05.g1)
ACCAG278899AG278900
length1,2591,278
length of high quality
(start - end)
554 (74 - 627)320 (76 - 395)
definitionCHROMAT_FILE: MSMg01no049_h05.b1 PHD_FILE: MSMg01no049_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:29 2005CHROMAT_FILE: MSMg01no049_h05.g1 PHD_FILE: MSMg01no049_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTCTGGT
CTATGAAATTGCTGTTTCCAGATGTTTGATGACGAGTTTCCTTAACCTTA
CCCTCTTGACGGTCAAACCAAACTTCCTTCATAGTGTTAAAATTGTCCAC
TACCTCAGCCAGACAAGTTAAAACCAATTCTACTACATGGGTCTGAATCT
CCATGGCTTTTCTACCTGGTAAGTTTTGTCATTGGAGCATCTTGAGAGGA
CAGCTTAGCAAGGTTAATATGAAGAGATGTTTTCATTGAACTTGAAATTC
AACTGATTGAAAATATCCCTTGCTTAGCTATCTTCTAATTGAAACTGCTG
TGAGAAAAAGCAAACGGAAGCTGACCCGGTATGCTTTAAAATACTTATTC
CATCTGATAACTGGGATACAAACAAGGTATGCTCTTACAACCTTGCATTC
AAGATAAGGCTGCACAGGTGGTTGTTCCCAGAGACTTCTGGACAACAGCA
TCTCGTCAGCAGGGAACTTATACGGAATGCAATGTCTCAGACAATGCAGT
GGGGAACGGCGGGATGGATTGGCAATAGTCAGTCTCAGACCCTCCAGGTG
ACTCCACTGACAGCTTATGAACCACAGATGCACAGCGAAGCAGGATCCTT
ACTGCTGCAGGTGCAGAGATTGCCTGGAACACCGAGCTCTGCCCCTGCTC
AGTAGGTGACCTTCAGCAAGTTACTTAACACTCATAGGTCTTAATACCCT
CATCCATAAAGTAGCTATGATAATAATGCCTAACTCACTGTAACACTGTT
AATAATCCACTACTTAAGAGAGTTATGCAAAGACTTGGTGTAAAGTGGTG
AAAATCCATTAATGCAGGACATTATTCTCTCTGCTACTAAATGATTACAA
GTTTTGTTCAATTCAAATTGGCATTTGTAATTAATTCCACATCTCCCTAT
ATGTCCATTTATAAAAACCCCCTGGCCATGTCTCACTCTCTTTTAAAATA
AAAGTCTTAACCTCCTTGATGTTGGTCCAATAATTCTTCTAAAATACTAT
TTTTCAAACAATATTTATCCCATGGCTTATAAACATTTGGTTTCTGTTCC
TCCAACTCAACGTATATTAAATTTCTTGTCAAAAATACCTCTTTCTCCTC
AGCTCCGGTATATTCATAATAATAGTACTTCTTCTGCGTTTATCGACTCT
TTTATCAAATAATAACTCCTTAGAGAAATTCTCTATTACTACCAGTTCAT
ATCCTATAT
ATATGAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTCTTTAAAGGTTTATATCTCATGTTTCAATTGGAT
TATTTGCCTTGTTTATGTCCCCCTTTTTTAGTTCTTTATATATTTTGAAT
GTTAGTCCTCTGTCCAATATGGAGTTGGTGAAAATCTTTTCTCATTCTAT
AGGTTGCCATTTTCTCCTATTGGCAGTATCCTTTGCCTTACAGAAACTTT
TCAAGTTCATGAGTTCTATTCAAGAAGTTGTCTCCTGTGCCAATATGTCT
CAAGATATTATTCTCCACTTTCTCTTCTATCAGGTTCAGTGTATCTGATT
TTATGATGAGGTCTTTGATCCACTTAGACTTGAGTCCTGTGTAGAGTGAT
AGACATGGATCTATTTGCCTTCTTCTACATCCTCTTAGACCAGCATTATT
TGCTGAAGATGCTTTTTCCCCCATTGTCTCTTTCTGGGGTTTATTGTTTT
GTTTTGTGCCTTCTTTTATCATAACTTTTATTAATTTTTTATCATTTATT
AATTCTTTTCTTTCTTCTTTCACTTCTATTATTTATTTCTTTATCCTAAT
TTTACATCTCTTTTTTTTTTTTTCTTTTTTCTTCTTATTTTTTTTTATAT
TTCTTTCTTTCTTATCTTATCTTTTTTCATTTTCTCTCTTTTTATTTTTT
TATTCATTTTTTCTCTTTTTTATAATCCTTCATTTTTATATTTAACGTTT
TATAATCTATACTTTTTTATATTATTTTACTTTATAACTATTCATTGTTT
GTTTCCTATTATACATCTCTTTTTTTCTTTAATTCCTTCTTTATTTAAAT
CTTTATCCCTAATCTTCTATTCTCTTATTTTTCATTTTATTCTATTTTTT
ATTTCTCTTTTATCTTACCTTATTTTTTTTTTTTTATATTCTTTCTCCTT
CTTATTATTCTATTATATTATTATATTATATTAATATTTTATTTCTTTAT
TTTCATTATTCCTTTTCTTTACATTTTTTATTTTCCTTATTTAATACTTC
TTTTTTTATTTCTTTTATTTTTATTCTTTATCTATTATTATTTTTCTATT
ACTTTTTTTTTTTTAAATCTTTATTTCTTTCCCTACTTTTCACTCTTTTA
TAATTATCTATTATTCTCCACAAACTTCTTTTTTTTATTCATTATATTAA
TATTTTATTTAAATATGTTTTTTAATTTATATTTTATATTTTTTTTTATA
TNAATTATTTTTATAATATATATTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_h05.b1 MSMg01no049_h05.b1 CHROMAT_FILE:
MSMg01no049_h05.b1 PHD_FILE: MSMg01no049_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:29 2005
         (554 letters)



>mm_chr19_17820980_17821933
          Length = 954

 Score =  913 bits (472), Expect = 0.0
 Identities = 530/554 (95%), Gaps = 8/554 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttgatgacgagtttccttaaccttaccctcttgacggtcaaaccaaacttccttcata 60
           ||||||||| |||||| |||||||||||  ||||||||||||||| ||||||||||||||
Sbjct: 201 gtttgatgaagagttttcttaaccttacagtcttgacggtcaaactaaacttccttcata 260

                                                                       
Query: 61  gtgttaaaattgtccactacctcagccagacaagttaaaaccaattctactacatgggtc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gtgttaaaattgtccactacctcagccagataagttaaaaccaattctactacatgggtc 320

                                                                       
Query: 121 tgaatctccatggcttttctacctggtaagttttgtcattggagcatcttgagaggacag 180
           ||||||||||||||||||||||||||||||||||||        ||||||||||||| ||
Sbjct: 321 tgaatctccatggcttttctacctggtaagttttgt--------catcttgagaggatag 372

                                                                       
Query: 181 cttagcaaggttaatatgaagagatgttttcattgaacttgaaattcaactgattgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cttagcaaggttaatatgaagagatgttttcattgaacttgaaattcaactgattgaaaa 432

                                                                       
Query: 241 tatcccttgcttagctatcttctaattgaaactgctgtgagaaaaagcaaacggaagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 433 tatcccttgcttagctatcttctaattgaaactgctgtgagaaaaagcaaacgtaaactg 492

                                                                       
Query: 301 acccggtatgctttaaaatacttattccatctgataactgggatacaaacaaggtatgct 360
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 493 acccagtatgctttaaaatacttattccatctgataactgggatacaaataaggtatgct 552

                                                                       
Query: 361 cttacaaccttgcattcaagataaggctgcacaggtggttgttcccagagacttctggac 420
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 553 cttacaaccttgtattcaagataaggctgcacaggtggttgttcacagagacttctggac 612

                                                                       
Query: 421 aacagcatctcgtcagcagggaacttatacggaatgcaatgtctcagacaatgcagtggg 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 613 aacagcatctcgtcagcagggaacttataaggaatgcaatgtctcagacaatgcagtggg 672

                                                                       
Query: 481 gaacggcgggatggattggcaatagtcagtctcagaccctccaggtgactccactgacag 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaaaggcgggatggattggcaatagtcagtctcagaccctccaggtgactccactgacag 732

                         
Query: 541 cttatgaaccacag 554
            |||||||||||||
Sbjct: 733 tttatgaaccacag 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)