Query= MSMg01no050_e07.b1 MSMg01no050_e07.b1 CHROMAT_FILE:
MSMg01no050_e07.b1 PHD_FILE: MSMg01no050_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:21 2005
(531 letters)
>mm_chr19_16301804_16302734
Length = 931
Score = 431 bits (223), Expect = e-125
Identities = 301/351 (85%), Gaps = 44/351 (12%)
Strand = Plus / Minus
Query: 1 aaaacggtatgccaacagtagtgcgccaaagcttatcaaggtaaacaaatgctcacgcac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 396 aaaacggtatgccaacagtagtgcaccaaagcttatcaaggtaaacaaatgctcacgcac 337
Query: 61 tgactcttcattcatttcactcactcaacagccaaattctgtgctaaatactgtgccagg 120
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgattctccattcatttcactcactcaacagccaaattctgtgctaaatactgtgccagg 277
Query: 121 tttaaagaacaaaagctcaacctccatcctctagtgttgctattcttcttatcatactaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tttaaagaacaaaagctcaacctccatcctctagtgttgctattcttcttatcatactaa 217
Query: 181 tgtttttccaggtagagcttgcttgcttgcttgc--------------------ttg--c 218
|||||||||||||||||||||||||||||||||| ||| |
Sbjct: 216 tgtttttccaggtagagcttgcttgcttgcttgcttatttatttatttatttatttgcac 157
Query: 219 t-----tgctt-------gcttg------cttccttgcttatttatttatttatttattt 260
| | ||| |||| | ||| | ||||||||||||||||||||||
Sbjct: 156 tccagat-cttatccccctcttggtccaccctccat--ttatttatttatttatttattt 100
Query: 261 atttatttatttgcactcccagatcttatccccctcttggtccaccctcca 311
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 99 atttatttatttgcact-ccagatcttatccccctcttggtccaccctcca 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_e07.g1 MSMg01no050_e07.g1 CHROMAT_FILE:
MSMg01no050_e07.g1 PHD_FILE: MSMg01no050_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:21 2005
(543 letters)
>mm_chr19_16162358_16163300
Length = 943
Score = 955 bits (494), Expect = 0.0
Identities = 530/542 (97%)
Strand = Plus / Plus
Query: 1 ggtatgactttccctgctctggaagacccgagtggctggacctgggatcaactgcaggct 60
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ggtatggctttccctgctctggaagactggagtggctggacctgggatcaactgcaggct 260
Query: 61 gctttaacaatctgtttgggagctgggttaggtgactagattcagtggggctgtatgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gctttaacaatctgtttgggagctgggttaggtgactagattcagtggggctgtaggttc 320
Query: 121 tttcaagttttgtagactttctcaccaaatggtaattgggtttttgtttttttcataccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcaagttttgtagactttctcaccaaatggtaattgggtttttgtttttttcataccg 380
Query: 181 tttcaaagcttcaacagtgagtatttcaatcaagatgaaatacagagagatgctacatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaaagcttcaacagtgagtatttcaatcaagatgaaatacagagagatgctacatga 440
Query: 241 acttatacagctgtgatagctattcttgcttgtcaactacatctggtattagctaaaatc 300
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 acttatacagctgtgatggctattcttggttgtcaactacatctggtattagctaaaatc 500
Query: 301 caaaaatggagggcgcacctttcaaggatattttgcttaatttaaagtagaaagagctac 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaaatggagggcgcacctttaaaggatattttgcttaatttaaagtagaaagagctac 560
Query: 361 ttctaatccagacctttttgggtaggaagacacatacttttaatctggatcttgagaccg 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 561 ttctaatccagacctttttgggtaggaagacacgtacttttaatctggatcttgagacag 620
Query: 421 gaagacacacgtttaaccagggctacaccttctgctggaagcctatataaggacatggaa 480
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 621 gaagacacacgtttaaccagggccacgccttctgctggaagcctatataaggacatggaa 680
Query: 481 aaaggcaatgttacctctttgcctgcttgccctctccttgagagcacatccattccttca 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggaaatgttacctctttgcctgcttgccctctccttgagagcacatccattccttca 740
Query: 541 ct 542
||
Sbjct: 741 ct 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
