BAC Information

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BAC

Clone NameMSMg01-052L08
Chromosome19 (Build37)
Map Location 54,514,955 - 54,515,483
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052L08.T7 (MSMg01no052_l08.b1)MSMg01-052L08.TJ (MSMg01no052_l08.g1)
ACCAG281126AG281127
length685685
length of high quality
(start - end)
568 (65 - 632)532 (69 - 600)
definitionCHROMAT_FILE: MSMg01no052_l08.b1 PHD_FILE: MSMg01no052_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:24 2005CHROMAT_FILE: MSMg01no052_l08.g1 PHD_FILE: MSMg01no052_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTATACGACTCCTATTTCAAGAAGACCGCGGAATTC
TTTGTTTACCTCATACCCCATTTTTAATACGGTTATCTGGTTCTCTGGAG
TCTATCTTCTTCAGTTCTTTGTATATATTGGATATTAGCCCTCTATCAGA
TGTAGAGTTGGTAAAGATCTTTCCCTGCTGTTTTGTCATATTAACAGTGT
CCTTTGCCTTACAGAACCTTTGTAATTTTATGAGGTCCCATTTGTCAATT
CTTGATCTTAGAGCATAATCCGTTGGTGTTCTGTTCAGGAAAATTTCCTC
TGTACCCATGTGCTCTAGACTCCTCCTTACTTTCTCTTCTACTCGTTTCA
GTGTATCTGGTTTTATGTGGAGGTCCTTGATCCACTTGGACTTGAGCTTT
GTACAGGGAGATAAGAGTGGATTGATTTGTATTCTTTTATATTCTGACAG
CCAGTTGAGCCTGCACTATTTGCTAAAAATGCTGTCTTTTTTCCACTGGA
TGGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCGTAGGTGTGTGGGTTC
ATTTCTGGGTCTTCAATTCTGTTCCATTCATCTACCTGCCTCTGTACCAA
TACCATGTGATTTTTATCACTATTGCTCTGTAATACAGCTTGAGGTCTGG
CGAGGTAATCTCCCTCAAAAGTTCTTTTACTGTCA
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTGTCCCAATAGAGATATAAATCCTGTAGG
AGAGGCCCCTGGTCTCGCTGAGCTCCACGTGGTACTGGGAGAGTTGTTAG
CAGAAAGATCTGAGGAGGAACTTAGGTAATGGATTGTGTGAAACAATGCT
AATGTTTGAATTAAAACCATAAATCAACTATGCAAATGAGTCTGTGCCCA
GGGCAGAAATGCAAACAGCCTGGAGAACTCAGAAAGCTAATAAGCCATCT
CTTTTCTATTACCTCTACAGTAAGTTTCCTGAGAGGAGGGTCTTGTGGGG
ACACCAAGACAGGGTAGCTCCCGGCATTCCAGGAACTCTCAAAGCCACTT
TACTGGGACCTGGCAGCATTTGGCAGTCACAGGCAAGGCTGCACAGTTCA
CATCTGTGTCTCTATCACAAAGCATTAAATATGCATCTGATCAAGACAGC
AGCAAGAATATGCAGCACCTGGGGGGGAAATTTGTTTGAAATTATGGCCA
CATGTGCATCCCTCCTCCCTGAGTTGGCTTCAGGTCTGAATTCTCATTAG
GGTAGTAAACCATGCAGGGGTGGGGGGTAGGGCCAGAAAAAGGCTGTGGG
CTGCTTTGGTGTAAAATAGAGGGACAAACGTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_l08.g1 MSMg01no052_l08.g1 CHROMAT_FILE:
MSMg01no052_l08.g1 PHD_FILE: MSMg01no052_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:24 2005
         (532 letters)



>mm_chr19_54514755_54515686
          Length = 932

 Score = 1000 bits (517), Expect = 0.0
 Identities = 526/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgtcccaatagagatataaatcctgtaggagaggcccctggtctcgctgagctccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttttgtcccaatagagatataaatcctgtaggagaggcccctggtctcgctgagctccac 670

                                                                       
Query: 61  gtggtactgggagagttgttagcagaaagatctgaggaggaacttaggtaatggattgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtggtactgggagagttgttagcagaaagatctgaggaggaacttaggtaatggattgtg 610

                                                                       
Query: 121 tgaaacaatgctaatgtttgaattaaaaccataaatcaactatgcaaatgagtctgtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgaaacaatgctaatgtttgaattaaaaccataaatcaactatgcaaatgagtctgtgcc 550

                                                                       
Query: 181 cagggcagaaatgcaaacagcctggagaactcagaaagctaataagccatctcttttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 549 cagggcagaaatgcaaacagcctggagaactcagaaagctaataagccatctcttgtcta 490

                                                                       
Query: 241 ttacctctacagtaagtttcctgagaggagggtcttgtggggacaccaagacagggtagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttacctctacagtaagtttcctgagaggagggtcttgtggggacaccaagacagggtagc 430

                                                                       
Query: 301 tcccggcattccaggaactctcaaagccactttactgggacctggcagcatttggcagtc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tccaggcattccaggaactctcaaagccactttactgggacctggcagcatttggcagtc 370

                                                                       
Query: 361 acaggcaaggctgcacagttcacatctgtgtctctatcacaaagcattaaatatgcatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaggcaaggctgcacagttcacatctgtgtctctatcacaaagcattaaatatgcatct 310

                                                                       
Query: 421 gatcaagacagcagcaagaatatgcagcacctgggggggaaatttgtttgaaattatggc 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gatcaagacagcagcaggaatatgcagcacctgggggggaaatttgtttgaaattatggc 250

                                                            
Query: 481 cacatgtgcatccctcctccctgagttggcttcaggtctgaattctcat 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cacatgtgcatccctcctccctgagttggcttcaggtctgaattctcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)