BAC Information

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BAC

Clone NameMSMg01-053D15
Chromosome19 (Build37)
Map Location 12,274,260 - 12,274,758
singlet/doubletsinglet
Overlap genenone
Upstream geneMs4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1
Downstream geneOlfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053D15.T7 (MSMg01no053_d15.b1)MSMg01-053D15.TJ (MSMg01no053_d15.g1)
ACCAG281500
length697693
length of high quality
(start - end)		---503 (76 - 578)
definitionCHROMAT_FILE: MSMg01no053_d15.b1 PHD_FILE: MSMg01no053_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:04 2005CHROMAT_FILE: MSMg01no053_d15.g1 PHD_FILE: MSMg01no053_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC

TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATGAAGGATCGGACTTAGCAAAT
GTTAGAAAGATTTCTAAATGACATGTGTACATTCCATTAGTAGACAGAAG
GTCTGATGTATAATATGAATTTAAAGGTTTTATAATTTTTTCTTCTTTTC
AGAGAACCTTTATGTCTTATGTATTACTCTTATTGCTGTTTAATAGATGG
AAAAACTGTGGTTTGGAGAAATGTATACAAGGACAAAAATCAATAAGTAG
CCAAGACAGAAATCCACCACCAAAACTTGTAAAATTTGCATTTAATTGTG
TATATGTGTGTGTGAGTGTGTGTGTCTGTGTTGGAGAGAGAGGGCTGACT
TTGGGTTTTAGTTCTCTCTGTATACCATGTGAGCCCAGAAGCTAATATCA
TAAGTTTGATACAAGTACCTGTCACTGAATGAAGAATCTTGCCAGTTAGT
CCTGAACACATATTTTATTTTATGATGCCAATACCCAAGCTTGTGATCAT
GAATGCTTTTCCTGAATTTCAGTTTCTTTTCATAACTTGACGGATACCTT
GCTGCCTTGATTTCTTCACTTATGGATACTAAACACAGTTTGGCTATTAC
AGCTGCTGTATTGATTGATTCACACTATACCTTTGAGATACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_d15.g1 MSMg01no053_d15.g1 CHROMAT_FILE:
MSMg01no053_d15.g1 PHD_FILE: MSMg01no053_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:04 2005
         (503 letters)



>mm_chr19_12274060_12274958
          Length = 899

 Score =  938 bits (485), Expect = 0.0
 Identities = 497/503 (98%), Gaps = 4/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgaaggatcggacttagcaaatgttagaaagatttctaaatgacatgtgtacattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatgaaggatcggacttagcaaatgttagaaagatttctaaatgacatgtgtacattcc 260

                                                                       
Query: 61  attagtagacagaaggtctgatgtataatatgaatttaaaggttttataattttttcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagtagacagaaggtctgatgtataatatgaatttaaaggttttataattttttcttc 320

                                                                       
Query: 121 ttttcagagaacctttatgtcttatgtattactcttattgctgtttaatagatggaaaaa 180
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 321 ttttcagagaacctttatgtcttatgt----ctcttattgctgtttaatagatggaaaaa 376

                                                                       
Query: 181 ctgtggtttggagaaatgtatacaaggacaaaaatcaataagtagccaagacagaaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgtggtttggagaaatgtatacaaggacaaaaatcaataagtagccaagacagaaatcc 436

                                                                       
Query: 241 accaccaaaacttgtaaaatttgcatttaattgtgtatatgtgtgtgtgagtgtgtgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 accaccaaaacttgtaaaatttgcatttaattgtgtatatgtgtgtgtgagtgtgtgtgt 496

                                                                       
Query: 301 ctgtgttggagagagagggctgactttgggttttagttctctctgtataccatgtgagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctgtgttggagagagagggctgactttgggttttagttctctctgtataccatgtgagcc 556

                                                                       
Query: 361 cagaagctaatatcataagtttgatacaagtacctgtcactgaatgaagaatcttgccag 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagaagctaatatcataagcttgatacaagtacctgtcactgaatgaagaatcttgccag 616

                                                                       
Query: 421 ttagtcctgaacacatattttattttatgatgccaatacccaagcttgtgatcatgaatg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 ttagtcctgaacacatattttattttatgatgccaatacccaagcttgtgatcaggaatg 676

                                  
Query: 481 cttttcctgaatttcagtttctt 503
           |||||||||||||||||||||||
Sbjct: 677 cttttcctgaatttcagtttctt 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 899
Length adjustment: 10
Effective length of query: 493
Effective length of database: 889
Effective search space:   438277
Effective search space used:   438277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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