BAC Information

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BAC

Clone NameMSMg01-053L14
Chromosome19 (Build37)
Map Location 26,234,604 - 26,234,839
singlet/doubletsinglet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053L14.T7 (MSMg01no053_l14.b1)MSMg01-053L14.TJ (MSMg01no053_l14.g1)
ACCAG281862AG281863
length709706
length of high quality
(start - end)
236 (78 - 313)72 (117 - 188)
definitionCHROMAT_FILE: MSMg01no053_l14.b1 PHD_FILE: MSMg01no053_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:43 2005CHROMAT_FILE: MSMg01no053_l14.g1 PHD_FILE: MSMg01no053_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATTTTACCCAATCATGGAGAGACGCAGATTCTGAGTCCTAAAA
TCTGTGGATTCTGAACCACTGAACTTGCTTACCAGTTCTACTTGAAAAGT
ATTCATACAGCTTAGATGTATAAGAAGCTTCTGCAGGCTCCATTCCATAG
GAACTGACACAGACCCGGGATGCTGTTGTAGGCCTGAGTCTGTAGAGCAT
CCGGATACTGCTGCACATTGGGTGTCTGAGTTCATGGGAATGACCTTGGT
CTTGAGTTGCAGTTGAGTATAATTCTGGTTCTAGGACCCAATGGGACGAA
TCTGACTTCTATGTTCATAGAAGTGGGCAAAGATTCACATTCAGTTGGAG
ATTTAAGCTGAAACAATAGGAGATGCCAGACCTGGAGTGAGCCTGGTTTC
TAGTCATGTAGGACTGAAATCTTGGTCCCTGGACACTAAGCTGGATTGTC
CCTCTGGGTTTAGTCACTATCGATGAGGCCATGACGTTAGTGTCTGTGCT
GGGATTCACTGGTCACAGACTGTATCCTGGGGTCTATGGCAAAGATGGGT
CTCAATTTACTCTCCTTCCAGAGCATGGTATTCTGGACGAAAGCACACGC
CATTTGGCCCTGTCCTTCTGAATCCCTCTAAATTCTTCTGCTCACTTCTC
CTCTGCCTG
TCGATGAAGTGGGAGGCTGGCGGCGCCTGTCCTCACATGTAGGTGACCTA
TAGAATGTCAGAAGAAATCTTTTTGGCATGGGTGCCTAAACATTAGCTGG
GCAAAGACAACAATACATAATATTAATACCACATGGAAAGCTCAGAAGAC
CTCAATCCTACATGAAAAACTACAGGCGACTAAAGTATTCTGAGAGCAGG
AGAGATAGTCTTCCCCAGGGAAAGGTATATCAATTAGTTGTCCAATACCC
AGCACTTATCCCCAAAGACATATATACAAATGAAAAGGTAATGCTACATA
GACTAAGAAAGTTATTTTTATCTATTTAGAAATCAGATGCACACATACAC
ACACTTACTCACACATACGCACGCATACACACACACCAAAGATGAAAAAA
AAATGAGGCCATAGATTTGAAAGACAAATGGGGCATGGTGCATGGTATTT
TTGGTGGTGGGCGGGGGAGAACATGATGCTTTGTGTGCTAATGCTGCTCA
TACTACACTATACTCCGAATAACATTACTATACTACATCAGCATATGTCT
TCCTTCCCCTTGGATAAATGCAGCGTCTCTTGATAATACGCCAATCCCTT
TGATATCTGTTATATGAACGTGCTCTGCCTAAATCCCTGATTTTCCCTTC
CCGCTTACAACGTCCCCCTCTCCAACTGACCTCCCCTTCACCTGTTCTCA
ATTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_l14.b1 MSMg01no053_l14.b1 CHROMAT_FILE:
MSMg01no053_l14.b1 PHD_FILE: MSMg01no053_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:43 2005
         (236 letters)



>mm_chr19_26234404_26235039
          Length = 636

 Score =  402 bits (208), Expect = e-117
 Identities = 229/236 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacgcagattctgagtcctaaaatctgtggattctgaaccactgaacttgcttaccagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 gacgcagattctgagtcctaaaatctgtggattctgaaccactgaagttgctcaccagtt 260

                                                                       
Query: 61  ctacttgaaaagtattcatacagcttagatgtataagaagcttctgcaggctccattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ctacttgaaaagtattcatacagcttagatgtataagaagcttctgcaggctccattccg 320

                                                                       
Query: 121 taggaactgacacagacccgggatgctgttgtaggcctgagtctgtagagcatccggata 180
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 taggaactgacacagacctgggatgctgttgtaggcctgagtctgtagagcatctggata 380

                                                                   
Query: 181 ctgctgcacattgggtgtctgagttcatgggaatgaccttggtcttgagttgcagt 236
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ctgctgtacattgggtgtctgagttcatgggaatgaccttggtcctgagttgcagt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)