BAC Information

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BAC

Clone NameMSMg01-054B06
Chromosome19 (Build37)
Map Location 57,650,531 - 57,650,677
singlet/doubletsinglet
Overlap genenone
Upstream geneNhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1
Downstream geneLOC100043038, Atrnl1, Gfra1, LOC100043503, 1700011F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054B06.T7 (MSMg01no054_b06.b1)MSMg01-054B06.TJ (MSMg01no054_b06.g1)
ACCAG282113AG282114
length756832
length of high quality
(start - end)
641 (114 - 754)152 (79 - 230)
definitionCHROMAT_FILE: MSMg01no054_b06.b1 PHD_FILE: MSMg01no054_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:11 2005CHROMAT_FILE: MSMg01no054_b06.g1 PHD_FILE: MSMg01no054_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCNNNNNNNNNNNNNNNNCCCCNNTTTTTCCCCCCCCCTTTTTTCTG
CGGGGGGGCATAGAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCATCATCTGACTCAGAGCTACCAAGAGC
TGGCTCCCCGAGCCCATCCAGCGATGAGCACAGGCTCCTTTTCCTAGAGA
CCTCCGCTAATTGATCTTTCTTCTTTTCCCTTTTTCCTCTTTTTCTTCTA
ATCTCTCTCCAGGTATTCCTACCTAACCTTAACTTTTCCTCGGGTTCAAG
ACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCATATTTCCTCTTTG
TTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGCTTGTCCTGAATTTCC
TCTAGAATTTTCAGCCCTATCTTAATCACTTGATAACATGTGAAAAGGAA
CAAAAGGGCTCCTAACACCAGAAAAAATTCAAGGCCAAACATATTCCACT
TTACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGACCAGAC
TTACCTCGTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAAAAG
TTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAAC
CTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTT
GCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTAT
TAGACC
CCCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACACACGAGTCGTCACGCA
AAGGCTTCTGTATACCGTTGTCCAATGTCCCTTGATATGTAAGCCAAGAG
CCTTAATGCACATAAAACATTTATACTCAAGAAGCACAGCTCTCAGTAAT
AGACAGATAACGTGGTCCGCATAGCTGCAGGCGNNCAACAATTTATGTAG
GGCGCAAACCTATTTGTGAATGACTTACAGGGAAAATTGCCCAAATTATC
ANGTGGATTCCAAAGCCACCTATGGCAGTGAAACCTATGGGCTTTGTTTA
AAAAAGCCAAAACCAAAGAAGGCCAAAAGTTTTTATTCTCGAAAAAAAAA
CCTTGAAACCCCCTTTTTTCTCAAATTCCCATCCTTAAAGAAAAGGTTCC
CCCCCACCGGGAGAACTTGGGGGGGCCTCCCCCCCGCGNGNTTTTTGGGG
GGGCNCTTTTTNNNCTNNNTNTTCGTGGNNNNNNNNNNNNNNNAAAANNN
NNNAATTAGNNNNNAAAANAGAGGNNTATTCTCTCCGCCNNNNNNNNNNN
NNNAGAAAATTATAAAATATTTCTTTGTGGAGNGGATACCCCCNCCCCTT
TAGTTTGAAGGGAACCCAAAATGTNNNNNCCCTTATGTAAAAAAAGAAAA
GAATCTNGCTCCACCTCACATCNTGGAAAAGAAATGGGCCNNCCCCAGTT
CCTTTGAGAAGAGGCTGCNNNNNNNNNNNNNNNNNNNNCNCCTCTTAATT
TTTGGCTGTTTGTTTTATATTATTTACTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_b06.g1 MSMg01no054_b06.g1 CHROMAT_FILE:
MSMg01no054_b06.g1 PHD_FILE: MSMg01no054_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:11 2005
         (152 letters)



>mm_chr19_57650331_57650880
          Length = 550

 Score =  244 bits (126), Expect = 2e-69
 Identities = 144/150 (96%), Gaps = 4/150 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacacacgagtcgtcacgcaaaggcttctgtatac-cgttgtccaatgtcccttgata 59
           |||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||
Sbjct: 347 tttacacacgagtcgtcaggcaaaggcttctgtat-ctcgttgtccaatgccccttgata 289

                                                                       
Query: 60  tgtaagccaagagccttaatgcacataaaacatttatactcaagaagcacagctctcagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgtaagccaagagccttaatgcacataaaacatttatactcaagaagcacagctctcagt 229

                                         
Query: 120 aatagacagataacgtggtccgcatagctg 149
           ||||||||||| |||||| |||||||||||
Sbjct: 228 aatagacagat-acgtgg-ccgcatagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 550
Length adjustment: 8
Effective length of query: 144
Effective length of database: 542
Effective search space:    78048
Effective search space used:    78048
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)