BAC Information

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BAC

Clone NameMSMg01-054P21
Chromosome19 (Build37)
Map Location 56,664,000 - 56,664,364
singlet/doubletsinglet
Overlap geneNhlrc2
Upstream geneVti1a, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a
Downstream geneAdrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054P21.T7 (MSMg01no054_p21.b1)MSMg01-054P21.TJ (MSMg01no054_p21.g1)
ACCAG282780AG282781
length755808
length of high quality
(start - end)
370 (105 - 474)---
definitionCHROMAT_FILE: MSMg01no054_p21.b1 PHD_FILE: MSMg01no054_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:18 2005CHROMAT_FILE: MSMg01no054_p21.g1 PHD_FILE: MSMg01no054_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCCCTTTTNNTTTNNNCCACCCTTCTCCCCNTTGCTCNNCCTACA
ATATTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACTCTGTACCCTAGACTAGCGTCAAACTCAGATCCA
CCTGCCTCTACCTCCTGAGTGCTGGAATTAAAGGTGTGCACCATCACCGC
CCAGCCCACTACACTCATCTTTATTTGTAGAAAGGGACAGCTGTCTAGCA
AGTCCAAGACCTCAGGTGTCCAGGCACAGGTGTGGAATGCAGCTGTGTAG
TGGTTTATGACAGTCACGCATCTGAAACAGCCGTTCTCAATCTGTGGGCT
GTGATCCCTTTGAGACTGAATGACCCTTCATAGGGGTCACCTAAGACCAT
CAGAAAACACAGATATTTTCATTATGATGTACCCTTAGTAATAATTACAG
TTATAAAATAACAACAAAAATAAGTACATGGTTGGGAGTCACCACAACGT
GAAGAACTGTATTCAAGGGTCGCAGCATTAGGGAGGTTGAGGACCACTGA
CATAAAATGTTTGTTGGTTCCTTTCACTAGGCACTGTGTTGGACACTAGG
GATGCAGTTAGATGACCTCTGTGTTAGAAGTAGAAGGAAGACATGCCCGT
CCTCAGAAGAATCAGATCGGCAAACAGTGACAGTAGAGAGTGCTTGTGTC
AGCAGCATCTGCGCTCCTTCATGTCGAGCTCCTTAGCCAAGGGATTTGAT
ATGTA
CAATACAGTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXNACAATTATCCCCGAAATTCTTTGTTTTAAGAGCTGTTTGGAC
ACTACAGTGATGTGTGTGTGTGTCCCTGTGTGTGTGTGTGTGTGTGTGAG
CCCCCACTCCCCACCCTACAAAATACCCAAATATCCCTTACCAATCTCTC
TAACCCCACCTTACACATCCTAAAAAACAACATACACCCTATACCACAAA
CCCACTTCACTCATCTCTCCCCCATAACACTACCAACATCTTCCACCCCC
AAAATCTTCTCCCCCAACCCCTTTTTTTCCAACCTCCAACAACCCACACC
CCTCAAAAACATAACTTATACACTCCCCCACTAAAATCCATAAAAAAAAA
CCACAATCCCACAACACTCATCTACTCCCCCCCCCCCCCTAATAATCCAC
CAAATCATTATCCAACTCATACCCCAATCCAACCAAAACACCCCTTTTAA
CCCTCACCCCACCTCACCCCTCCCATAATATTCTATTACCCATCTATTAA
TATCCACAAATTCTATAACTCAATTATAAATCCCACCAATACCCAATAAC
TATACTAACACACATATTACAAATAAAACAAACCAAACACATCACCCCCC
CCACTCCTCCTTCAATTTATAATTTTAACACAATTAACCTACCACTCTTT
CATTATATCTTCTTACCCTTCTTTTTTCACCCCACAACCAATCAAAAACC
ACATATACAAACAAAATAATCATCATATTCAAAAAAAACTATAATATAAA
TTTACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_p21.b1 MSMg01no054_p21.b1 CHROMAT_FILE:
MSMg01no054_p21.b1 PHD_FILE: MSMg01no054_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:18 2005
         (370 letters)



>mm_chr19_56663796_56664565
          Length = 770

 Score =  630 bits (326), Expect = 0.0
 Identities = 356/366 (97%), Gaps = 1/366 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgtaccctagactagcgtcaaactcagatccacctgcctctacctcctga 64
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctgtactctagactagcgtcaagctcagatccacctgcctctacctcctga 264

                                                                       
Query: 65  gtgctggaattaaaggtgtgcaccatcaccgcccagcccactacactcatctttatttgt 124
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgctgaaattaaaagtgtgcaccatcaccgcccagcccactacactcatctttatttgt 324

                                                                       
Query: 125 agaaagggacagctgtctagcaagtccaagacctcaggtgtccaggcacaggtgtggaat 184
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| 
Sbjct: 325 agaaagggacagctgtctagcaagttcaagacctccggtgtccaggcacaggtgtggaac 384

                                                                       
Query: 185 gcagctgtgtagtggtttatgacagtcacgcatctgaaacagccgttctcaatctgtggg 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 gcagctgtgtagtggtttatgacagtcacgcatctgaaacagcagttctcaatctgtggg 444

                                                                       
Query: 245 ctgtgatccctttgagactgaatgacccttcataggggtcacctaagaccatcagaaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgatccctttgagactgaatgacccttcataggggtcacctaagaccatcagaaaac 504

                                                                       
Query: 305 acagatattttcattatgatgtacccttagtaataattacagttataaaataacaacaaa 364
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 acagatattttcattatgatttacc-ttagtaataattacagttataaaataacaacaaa 563

                 
Query: 365 aataag 370
           ||||||
Sbjct: 564 aataag 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)