BAC Information

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BAC

Clone NameMSMg01-055J01
Chromosome19 (Build37)
Map Location 21,878,844 - 21,879,289
singlet/doubletsinglet
Overlap geneTmem2
Upstream geneTmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik
Downstream geneEG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055J01.T7 (MSMg01no055_j01.b1)MSMg01-055J01.TJ (MSMg01no055_j01.g1)
ACCAG283202AG283203
length705709
length of high quality
(start - end)
534 (40 - 573)446 (74 - 519)
definitionCHROMAT_FILE: MSMg01no055_j01.b1 PHD_FILE: MSMg01no055_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:00 2005CHROMAT_FILE: MSMg01no055_j01.g1 PHD_FILE: MSMg01no055_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CACCAACTTGCTCCTAATATGCAATGTAGCCTGTACTGAAGATTTCTATC
TCAGTGGGATTCCCTGGCTCTTTCATGGTAAACACTCTGCAGACCAGCTT
TGAGCTGCTTTGGCTTAATTAGTTACTGAATAGGTAAGTTCCTTACTGCA
TTCTTACAGGATTCTAAGCTTGTCGGCTTCTGGAACCTTGGAACACTGGC
AAAGGCTCTGGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAAG
ATAATACTAAAAGAGAGCACGTGGATCCATACACTAGACTAACGCGGGGA
TAGGATGTGAGTATACAGGTTAATGAAAACGCCAAAGCTCCAGGAGGTGA
GTTCCTTTTGAAACTCTTTGCCTCGTGAGTGCTCCCAGGCTTCTCAGCCT
GTCAAGCAGACTTCACTGGAGTGTGCGTGACAACCATCCATGAAGGAATG
TTGCTTACTGGCCTGCTCTTCATGGCTTACTTAGCCTGCTGCCTTGTACA
ACCAAGGATCAGATGTCTGCCCAGAAGTAGAACCACCCACAATGGGCTGT
GCCCTTCCTTCAAGAAAACACCTGATTGACACGCCTACAGGCAATGTGGA
TAGAGGCCTTTTCTCAACTGAGGTTCTTCTTCCCACATACCTCTAGCATA
TCAAG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCACCCCTTCCAGGAAGCAGGAAGCCC
ATGGCAGAAGGCAGGAGTTCCCCTCTTCCAGAAGCGAGCAGCCAGTGTGA
GTGGTCCTCTCTCACACAGGAAAAGCTGACTCAAAGCCCAGCTGTCGTCG
ACTCCAGCCTGGAACTTTCCTGGAGACAGGACCATTGAACACACTCTGGA
CCAAACTGCAGCGAGGGCCTGGGCTGAGCACCTGTGCCTGTCGGGGCTAT
GGGAGCCGGAAGCAGGGCTTGGCCAGCTTCTCCATCCATCACAGACATCG
CTTCCTCTCCTTTGCCTCCCACGCTGCTTAGAAACGATACACGGAACCTT
CCTGTCACACCTCAGAGATTCCTTATCCTTGGGTTTTGGTTTTTGATATT
TTACTTATCTTTATTTCATGTGTATGGGTGTTCTGCCTGCAGGTCTGACT
ATGTGACGTAGGCATGCAGTGCCCACACAGGTCAGAGAGAGCATCAGATC
CTCTGGAACCGGAGTTACGGATAGCTGTACTTTGTCATGTGGCTGCCGGG
AATTGAACCAGGGTCCTCTGGATAAGCACCAGCGCTTCCATCACTGAGCT
ATCTCTCCAGCCCCTCTCTGATTCGCTCGCAAGAAGAACATCGCGCTTTA
TCTTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_j01.g1 MSMg01no055_j01.g1 CHROMAT_FILE:
MSMg01no055_j01.g1 PHD_FILE: MSMg01no055_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:00 2005
         (446 letters)



>mm_chr19_21878709_21879554
          Length = 846

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaccccttccaggaagcaggaagcccatggcagaaggcaggagttcccctcttccagaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 581 ccaccccttccaggaagcaggaagcccatggcagaaggcaggggttcccctcttccagaa 522

                                                                       
Query: 61  gcgagcagccagtgtgagtggtcctctctcacacaggaaaagctgactcaaagcccagct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gggagcagccagtgtgagtggtcctctctcacacaggaaaagctgactcaaagcccagct 462

                                                                       
Query: 121 gtcgtcgactccagcctggaactttcctggagacaggaccattgaacacactctggacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtcgtcgactccagcctggaactttcctggagacaggaccattgaacacactctggacca 402

                                                                       
Query: 181 aactgcagcgagggcctgggctgagcacctgtgcctgtcggggctatgggagccggaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aactgcagcgagggcctgggctgagcacctgtgcctgtcggggctatgggagccggaagc 342

                                                                       
Query: 241 agggcttggccagcttctccatccatcacagacatcgcttcctctcctttgcctcccacg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 341 agggcttggccagcttctccatccatcacagacatcgcttcctctcctttgcctcccaag 282

                                                                       
Query: 301 ctgcttagaaacgatacacggaaccttcctgtcacacctcagagattccttatccttggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 281 ctgcttagaaacgatacacggaaccttcctgtcacacctcagagattccttttccttggg 222

                                                                       
Query: 361 ttttggtttttgatattttacttatctttatttcatgtgtatgggtgttctgcctgcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttttggtttttgatattttacttatctttatttcatgtgtatgggtgttctgcctgcagg 162

                                     
Query: 421 tctgactatgtgacgtaggcatgcag 446
           ||||||||||||||||||||||||||
Sbjct: 161 tctgactatgtgacgtaggcatgcag 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)