BAC Information

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BAC

Clone NameMSMg01-059O20
Chromosome19 (Build37)
Map Location 34,904,164 - 35,060,894
singlet/doubletdoublet
Overlap genePank1, Mphosph1
Upstream geneLOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714
Downstream geneLOC383464, LOC100042292, A830019P07Rik, Htr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059O20.T7 (MSMg01no059_o20.b1)MSMg01-059O20.TJ (MSMg01no059_o20.g1)
ACCAG286491AG286492
length730771
length of high quality
(start - end)		564 (75 - 638)221 (73 - 293)
definitionCHROMAT_FILE: MSMg01no059_o20.b1 PHD_FILE: MSMg01no059_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:33 2005CHROMAT_FILE: MSMg01no059_o20.g1 PHD_FILE: MSMg01no059_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,904,164 - 34,904,727)(35,060,674 - 35,060,894)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATACGCGGA
ATTCTGTAAGTGCGTTCCCGAATCAGAACAGGTCACCGGCCAGGTGACAG
AAGGAATATTGATACACAGAAATAAGCATTCAAAGTGGCCCACAGCTAAT
GCATCCCATGAATGTTTCCAAATGTTTCATTTTAATCAAGTATTGAAATG
TTTCAATGAGATACACACAATTTATATTCTAAGAGGCATCAATGACAATG
CTATGGGTAGAGAAGTGTCCAGACGCCTGAAAAACTAGAGGTGACGCCCA
CAGCAGAGTACATATTATGTCTTCTGATCTTCTTGGTTCCCCAGCCTGAA
ACCTGCATCTCTGGTCACAGCCTGGCACCTCAGAGGTGCCTTGGTTCTAA
AGGCCGTTCTTAGTCGCTGCTTAATACACACTTAGTAAATGAGCAGGGAA
AGTTATCACCTCAAGGGTCAGCCCCAAGCTTAAAATGGTGATTGCATCAG
CCAGTCTTAGAGATATAAATTAATCTGCTTAAATGTTAATCACAGGTTCA
TCAACAATATTGACAGCCACACCTAAAGCCAACATCATAAATATGGACAG
AGACAATGTGTCCAGCTAGATGCCCTGAAACTACCCTGTGAGGAAGAAAA
TCCCTTGTCAGATAGAAGAAGGAAACATATCCAGCTTTGGTCTGAAACAC
TGTTTCCACCTTCCGCGAATACGGTAAAAG

CATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTTTCTAAGCTCATTTTGGTTCTAAG
AATAAAGGAAGAGTATCTTCTAGGGGTTGGTGGAGGAAAAGCTGGATGGA
GAAAAGGTCTTGTGAGCTGGAAGGTGGGGTGATTCTGTCCCAGGATTGAA
GTGTGCAGAGCACCTGGTCTTAATATCCTGATTTGTGGGCTGCCTGCTGG
GCTCCTGTGGGGAAAGCTCCCTGGCCCAAAAGCTCATCATAGCTGATTCC
ACCTGATCTGTTGGAGCTTTTTGCCTAAATATCTCTTCCCGGGGGAGAAA
CACCAAACCACAGGGATGCGAATTTCCCTCAACAATCCCAGGGCGTGTTT
AATTTGGAGAGTTGACTTTGCACGAGGGATTTAGTCCAAGGGGAAGCCAT
CCCCCTTGGCGGGGGGGTGGGTTTTTTTATATCCTCCCCCCCCGTTAAGG
GTAGCCCTTGCTTTTCTCTCTCCCTTGCGGGTGGGGGGTCTCCCCCAAAA
TGTTGGGATTTTTTAACCCCACACACGCCGGGTCTNNNCTTTTTTCCCTT
ATATGAAGAAAATCCCCCCCCTATATGTCGCCTTCTCCCNCCCCTTTCTT
TTTTTCCTCCATTATCTTTTCCATCTTATTTTGTGTGGGTTTTTCTCTTG
TCCCCTCCCTCTTAGCCTTTCCTTCGCTCCTTCCTTTTTTCCCCCTCTCC
ACTCCTTTCTTTCCCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_o20.b1 MSMg01no059_o20.b1 CHROMAT_FILE:
MSMg01no059_o20.b1 PHD_FILE: MSMg01no059_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:33 2005
         (564 letters)



>mm_chr19_34903964_34904927
          Length = 964

 Score = 1029 bits (532), Expect = 0.0
 Identities = 556/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacaggtcaccggccaggtgacagaaggaatattgatacacagaaataagcattcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacaggtcaccggccaggtgacagaaggaatattgatacacagaaataagcattcaaa 260

                                                                       
Query: 61  gtggcccacagctaatgcatcccatgaatgtttccaaatgtttcattttaatcaagtatt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggcccaaagctaatgcatcccatgaatgtttccaaatgtttcattttaatcaagtatt 320

                                                                       
Query: 121 gaaatgtttcaatgagatacacacaatttatattctaagaggcatcaatgacaatgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatgtttcaatgagatacacacaatttatattctaagaggcatcaatgacaatgctat 380

                                                                       
Query: 181 gggtagagaagtgtccagacgcctgaaaaactagaggtgacgcccacagcagagtacata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gggtagagaagtgtccagacgcctgaaaaactagaggtgacgcccacagcagtgtacata 440

                                                                       
Query: 241 ttatgtcttctgatcttcttggttccccagcctgaaacctgcatctctggtcacagcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgtcttctgatcttcttggttccccagcctgaaacctgcatctctggtcacagcctg 500

                                                                       
Query: 301 gcacctcagaggtgccttggttctaaaggccgttcttagtcgctgcttaatacacactta 360
           |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||
Sbjct: 501 gcacctcagaggtgccttggttctaaaggccactcttagtcgctgcttaatactcactta 560

                                                                       
Query: 361 gtaaatgagcagggaaagttatcacctcaagggtcagccccaagcttaaaatggtgattg 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaatgaacagggaaagttatcacctcaagggtcagccccaagcttaaaatggtgattg 620

                                                                       
Query: 421 catcagccagtcttagagatataaattaatctgcttaaatgttaatcacaggttcatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcagccagtcttagagatataaattaatctgcttaaatgttaatcacaggttcatcaa 680

                                                                       
Query: 481 caatattgacagccacacctaaagccaacatcataaatatggacagagacaatgtgtcca 540
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caatattgacagccatacctagagccaacatcataaatatggacagagacaatgtgtcca 740

                                   
Query: 541 gctagatgccctgaaactaccctg 564
           ||||||||||||||||||||||||
Sbjct: 741 gctagatgccctgaaactaccctg 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_o20.g1 MSMg01no059_o20.g1 CHROMAT_FILE:
MSMg01no059_o20.g1 PHD_FILE: MSMg01no059_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:33 2005
         (221 letters)



>mm_chr19_35060474_35061094
          Length = 621

 Score =  412 bits (213), Expect = e-120
 Identities = 219/221 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttctaagctcattttggttctaagaataaaggaagagtatcttctaggggttggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 421 ttctttctaagctcattttggttctaagaataaaggaagagtatcttctgggggttggtg 362

                                                                       
Query: 61  gaggaaaagctggatggagaaaaggtcttgtgagctggaaggtggggtgattctgtccca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 361 gaggaaaagctggatggagaaaaggtcttgtgagctggaaggtggggtgattctttccca 302

                                                                       
Query: 121 ggattgaagtgtgcagagcacctggtcttaatatcctgatttgtgggctgcctgctgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggattgaagtgtgcagagcacctggtcttaatatcctgatttgtgggctgcctgctgggc 242

                                                    
Query: 181 tcctgtggggaaagctccctggcccaaaagctcatcatagc 221
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcctgtggggaaagctccctggcccaaaagctcatcatagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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