BAC Information

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BAC

Clone NameMSMg01-060K04
Chromosome19 (Build37)
Map Location 25,354,865 - 25,355,164
singlet/doubletsinglet
Overlap geneAnkrd15
Upstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060K04.T7 (MSMg01no060_k04.b1)MSMg01-060K04.TJ (MSMg01no060_k04.g1)
ACCAG287033AG287034
length790723
length of high quality
(start - end)
39 (69 - 107)300 (78 - 377)
definitionCHROMAT_FILE: MSMg01no060_k04.b1 PHD_FILE: MSMg01no060_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:25 2005CHROMAT_FILE: MSMg01no060_k04.g1 PHD_FILE: MSMg01no060_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAACGACTCCTATTTCCAGAGATCCGCGGAATTCA
GAACTGACAAAGTAACTAACGGTATGTGTGCTTGGATTTTTTTTTTTTTT
TCTGTACTAACAACTCCAAGATGGAGTGATGCATATCAGGCCACTGGGTC
AAGAGACCGCATAGGAAACTAGACAATTTCATCATATACATCAGGCGTTG
ACATTTCGTTCTTACTATCCTTTATTGTGAATTCCGGGTTATTTGTTTGC
TATAAACTCTGCCACCACGACGAAATTGCCTTGCTTTCTGCCCCCCCTGT
CTCTGACGGCTCTCTCCCCCACGGGCCCCTCTTCCGATCTGCCCCCTCAC
CTTATGTTCTATTTCTACCTCACCGCCTCCCTTCTGCTAATTTTTTTCTT
TCTTTTACTCCTCCCCCTTATTCTCATAACAAACCCCTTCCCACCCTGCC
CCCCCTTTTTCTGTTCCTCCCTCCTCCTCCTTTCCCCCTTTTCTCCCTTC
TCTCCGCTTTCCCTTTCTTCTTGTCTTCTCCTACCTCTTTGTTTTTCCCA
CTCCCCTTATTTCCATTTCGCCCCCCCACTTTTCTCTCTTCTCTCTTACT
TTCCACACTCTTTCCACCCTTTCCGCTTATTACTTCTCTTCTTCCTCCCC
TCTATTTCCTTATCCTCTTCTCTCTTCTCTTATTCATCGCCCCTACTGTC
TCTCTTATCTTTTTATTTTCTCATTCTTTTTCCCATATATCCCCACTTCT
CTCTTCCTTTCCCTCTTTTTCTCATTTATCCCCTACTCTA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTGTATGGACCAAGGAGTCA
CAGAAGGCTAAAGTTCACGGAACTGGTAGCTGTACTGTAACTTCTCCTGA
GGAAAGGAAAACGGAAAAAAAGCGTTTATTCACCCCAGACTGGGAAGGCG
TTGACCGAGGAAGGACAGGAGTTGGGTCAAGTGGTGAATGAATGGTATTC
CCAAGTTAGTTCCGGAAGAAGGGACTCTGTCACCAGAAACCTGGACTACG
TAGGGGAAGCTGTATCCCTGACGAGTTCCGCCCATGGCTTTGCTAACCCA
CACTAATGATTCCAACACAGAGCCCCCGGGGCACCTTCATGTTTGATAAG
TGTCCAGTCACACCCTTTACTCCTTCCCCACTAAGAAATAGTTTTCTACT
TCTATAACCTTGGGAAGGCTGGACCACGTGAGGATCTTGTGAGTTTTTTT
TTTTTTTTCCCTTCCTTCCACCACAGGAATGATAAACGCCCAGTCCTCCT
GCGAGTGAGGCGGTTGATTTCACTTGCTCCCACCCTCGCATGCTTTCGCT
CAGTCTGAATAAAACACTCACTTTTCTCCTCGCCACCTTCCACCGTGATT
TTCCCCCCATCCCCATTTAAATCTCTTCAACTTTGTCGAGAATCACCCTA
CACCCTCCTTTCCTCCTCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_k04.g1 MSMg01no060_k04.g1 CHROMAT_FILE:
MSMg01no060_k04.g1 PHD_FILE: MSMg01no060_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:25 2005
         (300 letters)



>mm_chr19_25354665_25355364
          Length = 700

 Score =  542 bits (280), Expect = e-158
 Identities = 295/300 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgtatggaccaaggagtcacagaaggctaaagttcacggaactggtagctgtactg 60
           |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct: 201 tttgtgtatggaccaaggagtcacagaaggctaaagttcaaggagctggtagctgtcctg 260

                                                                       
Query: 61  taacttctcctgaggaaaggaaaacggaaaaaaagcgtttattcaccccagactgggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacttctcctgaggaaaggaaaacggaaaaaaagcgtttattcaccccagactgggaag 320

                                                                       
Query: 121 gcgttgaccgaggaaggacaggagttgggtcaagtggtgaatgaatggtattcccaagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgttgaccgaggaaggacaggagttgggtcaagtggtgaatgaatggtattcccaagtt 380

                                                                       
Query: 181 agttccggaagaagggactctgtcaccagaaacctggactacgtaggggaagctgtatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttccggaagaagggactctgtcaccagaaacctggactacgtaggggaagctgtatcc 440

                                                                       
Query: 241 ctgacgagttccgcccatggctttgctaacccacactaatgattccaacacagagccccc 300
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 441 ctgacgagttccgcccatggctttgctaacccacactaataattccaccacagagccccc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)