BAC Information

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BAC

Clone NameMSMg01-061J07
Chromosome19 (Build37)
Map Location 14,852,184 - 14,852,386
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
Downstream geneEG433225, EG635497, Pomc-ps1, LOC667482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061J07.T7 (MSMg01no061_j07.b1)MSMg01-061J07.TJ (MSMg01no061_j07.g1)
ACCAG287757AG287758
length870789
length of high quality
(start - end)
---205 (73 - 277)
definitionCHROMAT_FILE: MSMg01no061_j07.b1 PHD_FILE: MSMg01no061_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:36 2005CHROMAT_FILE: MSMg01no061_j07.g1 PHD_FILE: MSMg01no061_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCCCCTNCCAATCCGCNACTATTACATAAAACCCCGCTCCCCCCAA
ACCACTCGCTCTATAATTTGTGGNTGATAAACGACTCACTATTGGAAGAG
GGAGCGCGGAATTCTATGTATTGTGCCCCGCCTCCTTCCGAAGGCTATAC
CATTAACACTCAGAAGACCTCCCATCTTCCCTTCCCTCGGGTACTATGAG
CGTAGAGCTATTGCAGATTCTAGAGTTAGGAGAACCCGGTGCTCTACCCT
CTTCCTTGGGTCCCACTTACCCACAGATGTGCAGTTTTGCCAGACTGAGG
TAGGCGTTCTTCCTAAGCCGCCGCTGAGGTCCGCGGCAAACGTATTAAGG
GTTCCCTCCATTCTGCACAGACCACTATCTGTCTTTTAAGAGCGCCTGTT
GCGACACCAGAGAGCATTATTGCGCTTCACTTCAGTCTCGCTGTTCCGCG
ACATTCCCTCCCCCTACGGCACACTAGTATAATTCGCCCCCTGCCCTTTG
ACGCACCACCCTAACTCCGGCTTTTACAATCCCCAATTTTGCCCTTCGTA
AACCGCCCCCCTTCCCCTGCCTTATTTCACCCGCTCCGCCCCCTTTCCGC
CCCTCATCTCCCTTACCTACCACCACCCCCCCCCGCCTTAATTTGTTCCA
CTACACCCCCCCCCCTATCTTCTCCGCTTCTTCCCTGCTTCTCTGGAATC
TCTTGTCCTCCCCCCTCTTCTCCCTTTTTTCCTGAAATCCTCTTTCTAAA
CTTTGCCTCATTCCCGCTCGTGTTTCCTGCGTTGCCCATTAATCTACCCG
CCCCCTACCCCCCCGGATTTTTTTATCCTCCCTCTCATATACCCACACCC
ATCCCTTCTTCATCTCCCCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTTTTTAACGGAAAAGTAAA
TTGTCCTCTGCATTGAGCAGTTAACAAAAAAATAAGCAAGAGAAGCCAGA
CTGGGCATACTAAATGTTTTTGTATTTAAGACATTTTATTGAGATGAGTG
TTTACTGCTCTTTTTAGTGCAAACAGTTTGGATCACCCTCCTCCCTCGCT
GCGTGTTTTGATGGGAGAGATTCTGGGTAGTCGTCCTGGATTGGTCCCGA
GCTCCTGGATCCCTGTGTTACTTCTGGGCTCCAGCCCGAGTGACCGCTTT
CCTGTATGTGGTCCTGTCTACTGCCCATCTCCCTCAGTGCCATTGTTCTG
CTCCAGACCCTTGCTTTATTTCCAGTTACTTCCTATTACAAAATTTAGAT
TAAGCACTGTTATGTGTAAAAAACAAAATCTGAACCTGAGTTGATATTTC
CCCCTCGACCCCTCTCTTTTTTACTAGTCTTCTTTCCTGATGAACTCCCA
GCCACCATCCCCCTATTATATTTTATCATGCCATCTGATACTAGTATTTT
ACCATAAAAAAGCCCCCATGAGTTTCGTTATTTTTTGTTTGCCTCAAAAT
AAAAGGTAGCGAGAAACCTTTTTTTTTTCATTTTTCCAAAACTTATTTAT
TTTCTTGAGAATGGACTTTTATGTTCCTCATAATGGGGGTTTATCTAAAA
AAACCACATAGGTTCTTCTCTTAGCCCTTTGGCAAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_j07.g1 MSMg01no061_j07.g1 CHROMAT_FILE:
MSMg01no061_j07.g1 PHD_FILE: MSMg01no061_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:36 2005
         (205 letters)



>mm_chr19_14851982_14852586
          Length = 605

 Score =  393 bits (203), Expect = e-114
 Identities = 203/203 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttttttttttttaacggaaaagtaaattgtcctctgcattgagcagttaacaaaaaaata 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttttttttttttaacggaaaagtaaattgtcctctgcattgagcagttaacaaaaaaata 262

                                                                       
Query: 63  agcaagagaagccagactgggcatactaaatgtttttgtatttaagacattttattgaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agcaagagaagccagactgggcatactaaatgtttttgtatttaagacattttattgaga 322

                                                                       
Query: 123 tgagtgtttactgctctttttagtgcaaacagtttggatcaccctcctccctcgctgcgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgagtgtttactgctctttttagtgcaaacagtttggatcaccctcctccctcgctgcgt 382

                                  
Query: 183 gttttgatgggagagattctggg 205
           |||||||||||||||||||||||
Sbjct: 383 gttttgatgggagagattctggg 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)