BAC Information

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BAC

Clone NameMSMg01-062D14
Chromosome19 (Build37)
Map Location 23,928,396 - 23,928,901
singlet/doubletsinglet
Overlap geneApba1
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
Downstream geneGm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062D14.T7 (MSMg01no062_d14.b1)MSMg01-062D14.TJ (MSMg01no062_d14.g1)
ACCAG288248AG288249
length1,2001,148
length of high quality
(start - end)
227 (467 - 693)745 (88 - 832)
definitionCHROMAT_FILE: MSMg01no062_d14.b1 PHD_FILE: MSMg01no062_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:35 2005CHROMAT_FILE: MSMg01no062_d14.g1 PHD_FILE: MSMg01no062_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACATGTAGGNANAACATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCATGAGGGNNNNACCGATTAGGCCCCCCGANNAGGAGA
GGGNNAGNAGGAACCCCTTTAAAAACCCTTGCNCGCNNNNACATCANAAG
AATACACAGCAACAAGGGGCCTCTTTGAAGCAGAAAGCGCCCCTTTACTA
CAGAATCTTTGATGCCTCCAAAATTATGAACAATAAATTTGTTATTTATA
AATTACCCACCATAAGGTATTTTTATCAGAATAGATCAAGATAGAAAATA
TTTGTAAGCCTTGCAACTGATAATGGGCTTATATTTATAATGTGTAAGGA
AGTAAATTCATAGTAGGAATTCAAATGATCCAATTAAAACTGGGCAAATT
TTTTTTTTCTCAAAGNNANGNAACNGACCAANAGANAAGAGACAAAGCGC
CCAACATTGCCAAGCATAATCAGNACAAGCTAAAACCATAATGGTTTGTG
CTTGCTTCAGCAGGACATACACTAAAATTGGAATGATACAGAGATTAGTG
TGGAGCCGGGCATGGTGGCGCATGCCTTTAATCCCAGCACTCACGAGGCA
GAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGT
TCCAGGACAGCCAGGACTATAGAGAGAAACCCTGTCTCGAANAANAAAAA
ANAAAAAAAAAAAAAAGAAGGAAAGAAAGAGATTAGCGTGGCCTCTGTGT
GAAGATGGCATGGTTTTTTGTGATGTTTCCCATTTTAAAGACATTTTCCC
TTAAAGAAAAAAATGACGTTTTTAAAAACACTGGCTTCCACTTCATAAAC
ACATTAAAAAGGCTGGTTTCCGGGGGAAAGATGGTGGCAAACATAAAAAA
AGAAAATGTTTGCATACAATTGGGGAATGGAATTTAAGTATAACCCATTA
TGGAAAAAGAAGGTGGAAGGTTCCCTCAAAAAAAGAAAAAATAAAACCGG
AGGGAAAGGACTAATTAATCCTCCCTTAAAACATAGAATAACCCAAAAGA
AATTGGAACTGAAAGGGAAATCTCCCCCCTCCAAAGGTTCATTGGCAAAC
ATGGAACCAGGCAGGGGCCCCAAGTGGAAGAGAATACAACCCTTAATGGT
GCGGTAAAAAGTGAATGGGGTGGGAAAAAAAAAAAAAGTGGGGGATAAAA

CCGTCTTTTTNNNAAAGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTATAATTCCTCCTCCTCTTCCT
CCTCCTCCTCCATCATCCTCATCACTAGCAACATTACCATGTGTGTGAGA
GATGGGCACCCATACTCCAGAAATCCTTATGGAGTTTAGGGGGACATCTT
TTGGAAAATGGTTCTCTACTTCCACCACGTGGTTCCTAGAGATAGAATTT
GGGTTGCCAGGCTAGTCAACAAGTGTACCTTCACCCACCGAGCCAGCTCT
CTAGCTCTCCACATTATTTTTGAGAAGAGAGTTTTCACTGAACTTTAAAC
TCATCTTTTCAGCTAGGCTGCCTAACCAATGAGCTTGAAGGATCTGTTTA
TCCCCACTGCCCCATCCCCAGCGCTGGGGCTATAGCCATCATGGGTCTTG
TTGGGCTGTGAGGGATCTGAACACAGGACTTCAAGCTTACACAGTGAGCA
CTTCACCCACTGAGCCACTTCCCAAGTTTTATTGCCAGAAGTTTTAGAAA
TAAGTAACCTGAAGATGAGAGAAGATGTTTTATGGTTGCTTTAGTTCACA
TTTTGGTGCTTATTGTTGAGTTGGACAGTTTCTCTGTGCACTCTGGCTGT
CCGACTTTCTCTTTAGGGAACTGTTAGGTTCTCTGCTCATTTATGGGCTA
TGACCTCGATGTTATTCATCAGAATTATATAACCTGGCTACATAATGAGG
CTGCTGTCCACTTAACTGTAAGATTTTGTATATGATTTAGGCGCCCGACT
AATCTTGCCTAACGTTGAACTCAAAGCGAGAAAAATGTCTATGTGGCAAA
ACCAGAAAACAATAATAGTCCACTTCTGTATTTATGATGGGTCACGAATT
GTTACTCAAGAAGAACCGTTAGCTAATTAATTCTCTTACGGGGACTCTGA
TGCAGTAAAATGGGCCTTTCCAGGAAACCTTAAAATACGGCAATTATTCC
ACCCTGACCCCCAAATTTGCCCACCATCCGGGAGGTGTCCCCCTACTGTA
ATTATCAAAGGGAAAAATTTGAAATCCCCTTTAAAAACCTTCCCGTATGT
CACCTGGAAAAAAACATATTTTTCCCCTGGGCCCCACAAAAAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_d14.g1 MSMg01no062_d14.g1 CHROMAT_FILE:
MSMg01no062_d14.g1 PHD_FILE: MSMg01no062_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:35 2005
         (745 letters)



>mm_chr19_23927757_23928901
          Length = 1145

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Minus

                                                                        
Query: 240  gagagttttcactgaactttaaactcatcttttcagctaggctgcctaaccaatgagctt 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 gagagttttcactgaactttaaactcatcttttcagctaggctgcctaaccaatgagctt 1086

                                                                        
Query: 300  gaaggatctgtttatccccactgccccatccccagcgctggggctatagccatcatgggt 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 gaaggatctgtttatccccactgccccatccccagcgctggggctatagccatcatgggt 1026

                                                                        
Query: 360  cttgttgggctgtgagggatctgaacacaggacttcaagcttacacagtgagcacttcac 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 cttgttgggctgtgagggatctgaacacaggacttcaagcttacacagtgagcacttcac 966

                                                                        
Query: 420  ccactgagccacttcccaagttttattgccagaagttttagaaataagtaacctgaagat 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  ccactgagccacttcccaagttttattgccagaagttttagaaataagtaacctgaagat 906

                                                                        
Query: 480  gagagaagatgttttatggttgctttagttcacattttggtgcttattgttgagttggac 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  gagagaagatgttttatggttgctttagttcacattttggtgcttattgttgagttggac 846

                                                                        
Query: 540  agtttctctgtgcactctggctgtccgactttctctttagggaactgttaggttctctgc 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  agtttctctgtgcactctggctgtccgactttctctttagggaactgttaggttctctgc 786

                                                                        
Query: 600  tcatttatgggctatgacctcgatgttattcatcagaattatataacctggctacataat 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  tcatttatgggctatgacctcgatgttattcatcagaattatataacctggctacataat 726

                                                                        
Query: 660  gaggctgctgtccacttaactgtaagattttgtatatgatttaggcgcccgactaatctt 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  gaggctgctgtccacttaactgtaagattttgtatatgatttaggcgcccgactaatctt 666

                                      
Query: 720  gcctaacgttgaactcaaagcgagaa 745
            ||||||||||||||||||||||||||
Sbjct: 665  gcctaacgttgaactcaaagcgagaa 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1145
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1135
Effective search space:   834225
Effective search space used:   834225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)