Query= MSMg01no062_n19.b1 MSMg01no062_n19.b1 CHROMAT_FILE:
MSMg01no062_n19.b1 PHD_FILE: MSMg01no062_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:53 2005
(649 letters)
>mm_chr19_30324215_30325259
Length = 1045
Score = 1046 bits (541), Expect = 0.0
Identities = 559/567 (98%), Gaps = 4/567 (0%)
Strand = Plus / Minus
Query: 83 tctctacaagattagatacatcctttcctagggaggccagacagggcaggcctctgctat 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tctctacaagattagatacatcctttcctagggaggccagacagggcaggcctctgctat 986
Query: 143 atatgtgccaagggctactgaccagcccctgtacgctctttggttggtggcttagtctct 202
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 985 atatgtgccaagggctactgaccagcccgtgtacgctctttggttggtggcttagtctct 926
Query: 203 gggagctcccaggggtccgggttggttgacactgttggtcttcctatggagttgtcttcc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gggagctcccaggggtccgggttggttgacactgttggtcttcctatggagttgtcttcc 866
Query: 263 ccttcagctccttcaatcctaaggtagttggggctgtaatattatcagatatgctttgaa 322
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 865 ccttcagctccttcaatcctaaggtagttggggctgtaataacatcagatatgctttgaa 806
Query: 323 gtttgtagttataggaccttaggagttgttggggatcacactttgagtacatggcacatt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtttgtagttataggaccttaggagttgttggggatcacactttgagtacatggcacatt 746
Query: 383 gaaataaaataaaacttatttatttacaagcaaggtcctatacattaaccacaactccag 442
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 gaaataaaataaaacttatttatttacaagcaaggtcct----attaaccacaactccag 690
Query: 443 agccatgagcatcaagcacaacagatacaatgtatcttttcctagatcaagcacaacaca 502
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 689 agccatgagcatcaagcacaacagatacaatgtatcttttcctagatcaagcacaataca 630
Query: 503 caatgtatcttttcctagatacattgaataacaaagaaaatgacaaaggttaaaccatga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 caatgtatcttttcctagatacattgaataacaaagaaaatgacaaaggttaaaccatga 570
Query: 563 agaaataataggagtattagatactgtattagattctcaggcagaatctattttaatttt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agaaataataggagtattagatactgtattagattctcaggcagaatctattttaatttt 510
Query: 623 taaaggtggtggtactattttgccttt 649
|||||||||||||||||||||||||||
Sbjct: 509 taaaggtggtggtactattttgccttt 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1045
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1035
Effective search space: 661365
Effective search space used: 661365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_n19.g1 MSMg01no062_n19.g1 CHROMAT_FILE:
MSMg01no062_n19.g1 PHD_FILE: MSMg01no062_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:53 2005
(608 letters)
>mm_chr19_30172243_30173250
Length = 1008
Score = 1000 bits (517), Expect = 0.0
Identities = 584/611 (95%), Gaps = 11/611 (1%)
Strand = Plus / Plus
Query: 7 gactgtctgtgtagggacattctcaggtgacagccatccagacggagggagctatgattg 66
||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 200 gactgactgtgtagggacattctcaggttacattcatccagacggagggagctatgattg 259
Query: 67 ctagtttctatacacactaccaacatctgcacatggatcaggactcggcccggttcctca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctagtttctatacacactaccaacatctgcacatggatcaggactcggcccggttcctca 319
Query: 127 ccttgacatgggtaaggctttgcctgttcccatgggtcggaggcactggtccttgtcagt 186
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 320 ccttgacatgggtaaggctttgcctgttcccttgagtcggaggcactggtccttgtcagt 379
Query: 187 agcaggtttacttaggacaagatccacttcttccatgttcattcaaggattctgcccctc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcaggtttacttaggacaagatccacttcttccatgttcattcaaggattctgcccctc 439
Query: 247 cccttggcttgttatctctgtttttcaaagaaactgctacttgaa-cttctgttaagctg 305
|||||||||||||||||||| ||||||||||||||||||| || |||| || ||| ||
Sbjct: 440 cccttggcttgttatctctgggcttcaaagaaactgctactt-aatcttccgt-aagttg 497
Query: 306 aggttaagttacctatggcccaagataaaaagcgccagagtggccttctctaataagcag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 498 aggttaagttacctatggcccaagataaaaagcgccagagtggccttctctaataagtag 557
Query: 366 gctgtacagactgtcctcagccagtcaaaagcaagggtgactgtccgtgaaaacatggc- 424
|||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 gctgtacagattgtccttagccagtcaaaagcaagggtgactgtccgtgaaaacgtggct 617
Query: 425 -------cgagagatcccgctacccttcagcgtcctgagtgtgtatcatgggtgtaaaat 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gttgggccgagagatcccgctacccttcagcgtcctgagtgtgtatcatgggtgtaaaat 677
Query: 478 caaatgggaaactcgcattactcaaactcagttttattaggacactaataaaagcagata 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 caaatgggaaattcgcattactcaaactcagttttattaggacactaataaaagcagata 737
Query: 538 aaaaaaaaagtccgcacagtgaaaggaggacacttatgctgtgacagatcaggcacatta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaaaaaaagtccgcacagtgaaaggaggacacttatgctgtgacagatcaggcacatta 797
Query: 598 gtgaggagaat 608
|||||||||||
Sbjct: 798 gtgaggagaat 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
