Query= MSMg01no063_f01.b1 MSMg01no063_f01.b1 CHROMAT_FILE:
MSMg01no063_f01.b1 PHD_FILE: MSMg01no063_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:37 2005
(580 letters)
>mm_chr19_15581869_15582848
Length = 980
Score = 1098 bits (568), Expect = 0.0
Identities = 574/576 (99%), Gaps = 2/576 (0%)
Strand = Plus / Plus
Query: 6 gaattcattatttttaaagaa-aggaaacacatagaaactatagggtaggagcagtatac 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattatttttaaagaacaggaaacacatagaaactatagggtaggagcagtatac 265
Query: 65 atgagccaggctaaaatgtaagaaaaaaaaatctctaataaaaggtagatctatttgatt 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 266 atgagccaggctaaaatgtaagaaaaaaaa-tctctaataaaaggtagatctatttgatt 324
Query: 125 ttgaagttagataaagtctcaagtgtcaaaatgtatataatattggatatacaaaggaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgaagttagataaagtctcaagtgtcaaaatgtatataatattggatatacaaaggaag 384
Query: 185 aaatgcaatccaacaccttgaactgaatttgcggtgaactagatgtgaatggagatagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgcaatccaacaccttgaactgaatttgcggtgaactagatgtgaatggagatagac 444
Query: 245 atgctcattgaatttgtggagagctgtatgtgaatggccatagaccctattgctacttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgctcattgaatttgtggagagctgtatgtgaatggccatagaccctattgctacttat 504
Query: 305 cgatggtcagccttcaggacaaggtcatggccaaacatctaaaaaaagcacttacataaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgatggtcagccttcaggacaaggtcatggccaaacatctaaaaaaagcacttacataaa 564
Query: 365 gaaagctaagccacttaccatgacaaaatgaaattaaaagtcactataaattggaaaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaagctaagccacttaccatgacaaaatgaaattaaaagtcactataaattggaaaaga 624
Query: 425 ggacaagtgaagagatacgttgaagtaaggtaagcaaggcattgacatttatggaagtag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggacaagtgaagagatacgttgaagtaaggtaagcaaggcattgacatttatggaagtag 684
Query: 485 cttcaagaggcacaggaatcccagtgtttatggctgaggtgacttgaatgagaggggcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttcaagaggcacaggaatcccagtgtttatggctgaggtgacttgaatgagaggggcct 744
Query: 545 ccggaagctcatatctttgaatacttggttttctgt 580
||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccggaagctcatatctttgaatacttggttttctgt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_f01.g1 MSMg01no063_f01.g1 CHROMAT_FILE:
MSMg01no063_f01.g1 PHD_FILE: MSMg01no063_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:37 2005
(281 letters)
>mm_chr19_15711440_15712120
Length = 681
Score = 489 bits (253), Expect = e-143
Identities = 275/283 (97%), Gaps = 4/283 (1%)
Strand = Plus / Minus
Query: 1 ctaaaacatcaagaat-aacaaatgtattagcctttgcttatcatcttgcaactcactga 59
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 481 ctaaaacatcaagaataaacaaatgtattagcctttgcttaccatcttgcaactcactga 422
Query: 60 taggctgtgtggttgtgagactcaacaacttgtgcttttgtgtaatatccaatttcccat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taggctgtgtggttgtgagactcaacaacttgtgcttttgtgtaatatccaatttcccat 362
Query: 120 atccagatacctgtgggacagggtgggtgggatttcctgagggcatggtggaggtgtagg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 atccagatacctgtgggacagggtgggtgggatttcctgagggcatggtggaggtggagg 302
Query: 180 aactagaatgt-aaccaagtcccctacaaggcggtggttagagacactgcccccccccgc 238
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 301 aactagaatgttaaccaagtcccctacaaggcggtagttagagacactgccccccacc-- 244
Query: 239 catgctctctaaaatttgatctgtacttttaattcacctcaaa 281
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 catgctctctaaaatttgatctgtacttttaattcacctcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
