BAC Information

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BAC

Clone NameMSMg01-068C17
Chromosome19 (Build37)
Map Location 45,590,156 - 45,741,764
singlet/doubletdoublet
Overlap geneBtrc, Poll, 5330431N19Rik, Fbxw4
Upstream geneSec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, EG627889
Downstream geneFgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C17.T7 (MSMg01no068_c17.b1)MSMg01-068C17.TJ (MSMg01no068_c17.g1)
ACCAG292726AG292727
length721718
length of high quality
(start - end)
321 (50 - 370)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no068_c17.b1 PHD_FILE: MSMg01no068_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:30 2005CHROMAT_FILE: MSMg01no068_c17.g1 PHD_FILE: MSMg01no068_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,741,449 - 45,741,764)(45,590,156 - 45,590,442)
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTGCATGGGAGAGCTGTAAAGTGAACTTCTAAACATTAC
AATAAAGGCTGGGGGTGCAACTCAGAGCCCCGAGTTTAATCTCTGGTGCA
CACAAACAAAACCCAATTGAATTATTATACAGTTAGGTATAAATACCTCT
TGAGCCTTTTCCCTTTTGATGTGACTTTCAATGTAATACACGCTTACTGC
AGAAAACACAGCACAGTGCAAAGGATTGGCAAACAGAACAAGACACAGTT
CCATGGTCATTGGTAGCATTTGTGATAGACCCTTCCAGTCTTTTTAAGAT
AAAGTAATATGAAATTTATTTTTGTTTTCCTCCCCCCCCGTGGTTGCACA
CACCTTTAATCCCAGCATTCAGGAGAGGCAGTTGAATATCTGTGAGTTTG
AGGTAAGCCTGGTCAACTGAGATAGTTCCAATCAAGGCTACATAGAGAAA
CTCTGTTTCAAAAGCAAAAACAACAACAAAAACAAACAAATTAATCAACT
AACCACACACACAAGTTTTCATTTTGAATATGTCAAAGACAGCAGGTTCA
TACAACAATGGCTTTCCTAGCTAGGATACTGACTATAAGCTACCACTCGT
GATTTCTGAAAATACATTTTAAATATTTTTCTCTCTTTCTAAGAACCTTG
TTACAAAAGCATTCACTGCAA
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGACATCCTGGTCTACAGAGTG
AGTTCCAGGACAGCCTGACTACACAGAAACCCCCGTCTCCAAAAGAAAAA
GAAAGCAGGGGTGACATGCATTGATTGATTGATTGATTGATTGATTATCC
CATTGGTGGTCAAGAATAGGCCGTGCGTTGTACTAAGTACCATCTGATTC
CTGGGTGTCCTTTTCAGAGTGTGGGATGTAAATGCAGGTGAGATGCTAAA
CACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATG
GCATGATGGTGATTTTTTTTTTTGACCCCCCCCTCCCTGTGTGGTATATG
GCTTCCCCAACTGACATCACCCTCAGGAGAAAGATGAAGGTACACCGAGC
TGCGGTCAAAGTTGTAGACTTTGATGACAAGTACATTATTTCTGCCTCTG
GAGATAGAACCATAAAGGTAACAGGTTCATTTTTCAGCAAGCTCACAAGC
TGCAGTAGGAGTTTGTGTAAAATCGTGATTGACGGCCACTGTATACACAA
GCTTTGTTGCAGGATACTGTAACAATTAAATTCATCTTTTATTTCTATAA
ACAATACTTATGGGCTTGCAGGTGCATCCTTACTGTTTATCACTTACCTT
GGCTTTCCCTAACATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c17.b1 MSMg01no068_c17.b1 CHROMAT_FILE:
MSMg01no068_c17.b1 PHD_FILE: MSMg01no068_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:30 2005
         (321 letters)



>mm_chr19_45741246_45741966
          Length = 721

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttgcatgggagagctgtaaagtgaacttctaaacattacaataaaggctgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcttttgcatgggagagctgtaaagtgaacttctaaacattacaataaaggctgg 460

                                                                       
Query: 64  gggtgcaactcagagccccgagtttaatctctggtgcacacaaacaaaacccaattgaat 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 459 gggtgcaactcagagccccgagtttaatctctggtgcacacaaacaaaacccaattaaat 400

                                                                       
Query: 124 tattatacagttaggtataaatacctcttgagccttttcccttttgatgtgactttcaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tattatacagttaggtataaatacctcttgagccttttcccttttgatgtgactttcaat 340

                                                                       
Query: 184 gtaatacacgcttactgcagaaaacacagcacagtgcaaaggattggcaaacagaacaag 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 339 gtaatacacgcttactgcagaaaacacagcacagtgcaaaggcttggcaaacagaacaag 280

                                                                       
Query: 244 acacagttccatggtcattggtagcatttgtgatagacccttccagtctttttaagataa 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 279 acacagttccatggtcattggtagcatttgtgatagccccttccagtctttttaagataa 220

                           
Query: 304 agtaatatgaaattta 319
           ||||||||||||||||
Sbjct: 219 agtaatatgaaattta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_c17.g1 MSMg01no068_c17.g1 CHROMAT_FILE:
MSMg01no068_c17.g1 PHD_FILE: MSMg01no068_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:30 2005
         (289 letters)



>mm_chr19_45589957_45590645
          Length = 689

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacatcctggtctacagagtgagttccaggacagcctg-actacacagaaacccccg 59
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 200 aaggacatcctggtctacagagtgagttccaggacagccaggactacacagaaacccccg 259

                                                                       
Query: 60  tctccaaaagaaaaagaaagcaggggtgacatgcattgattgattgattgattgattgat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctccaaaagaaaaagaaagcaggggtgacatgcattgattgattgattgattgattgat 319

                                                                       
Query: 120 tatcccattggtggtcaagaataggccgtgcgttgtactaagtaccatctgattcctggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatcccattggtggtcaagaataggccgtgcgttgtactaagtaccatctgattcctggg 379

                                                                       
Query: 180 tgtccttttcagagtgtgggatgtaaatgcaggtgagatgctaaacacattgattcacca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtccttttcagagtgtgggatgtaaatgcaggtgagatgctaaacacattgattcacca 439

                                                          
Query: 240 ctgtgaagccgttctgcacctgcgcttcaataatggcatgatggtga 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtgaagccgttctgcacctgcgcttcaataatggcatgatggtga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)