BAC Information

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BAC

Clone NameMSMg01-068N06
Chromosome19 (Build37)
Map Location 17,040,931 - 17,041,187
singlet/doubletsinglet
Overlap geneA230083H22Rik
Upstream geneCep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a, Foxb2
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N06.T7 (MSMg01no068_n06.b1)MSMg01-068N06.TJ (MSMg01no068_n06.g1)
ACCAG293231AG293232
length774710
length of high quality
(start - end)
74 (76 - 149)251 (78 - 328)
definitionCHROMAT_FILE: MSMg01no068_n06.b1 PHD_FILE: MSMg01no068_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:24 2005CHROMAT_FILE: MSMg01no068_n06.g1 PHD_FILE: MSMg01no068_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATCACTTCTGATAGGCAACTGACTCTTCTCACATGCCATGCATGA
CATGTTCACCCTTACCCCTCTTCCTCTCCTCCTCCTCCTCCTCCTCCTCC
ACCATCACCTCCTCCTCCTCCTCTCTCTCTCTCACTCTCTCTCTCTCTCT
CTCTCTCTGTCGCTCTCTCACAATGATATCTTGCAAAATACAGAAAGATA
AAAATCGATTAAAGATAAAAAAAATAAAATCTAAATATTGCATAGTTGAT
ATTTAGGAATGTGGGTGATCGTGCACAGTTCTTTTGTTGTTATGAGGGTG
GGTCTGGAGGTAGAGAAAGGAAGTTTAGGTAGTTTCCACCCCCCCCCCCC
CACGAAGGAGAGGAAATGAAGTAGGATGTGGTGTGGGCGCTAAGAAAAAA
AAAAAAAAAAATTGGGGGGGGTGGGGGTGGGACTAAAGAAGTGAGAGGTG
GGAGAGTTGAAAGGGGGGGTGGGAAGGGGTGTGGGAGAGGAGGGGGTGGC
AGAAAGATAAAAGGTTAGTAGATGATAAAGGGAGTAATGAATGTAGTGAG
AGATATGTGGGGAGGATAAAAGAATGGGGGTGAAGTGTGGAAGTAGGTGA
TTAGAATAAAGGGGGAAGAGAGCAGATGGGGAGAGGGAATACTGAGGAAA
TATAAATGGGAGAGGAACGGGAGGTTTAAAAAGGCGATNGGGATTTGGAT
GAAGAGTGTAGTAGAAATGAGGAG
NTTAGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAGAACCAGCTAAGATGCTG
CCCTTTTCGCTATAGGCCTCTAGCCACCACCAAGGAAAGGCCAGCAAGGT
TTCTCTGGTAGCCAAGGAGAGAGAGAAGATGTTTCTTCAATTGGGGTAGG
AAGCCAATCCAATCTACCTTACTACAAGCCAGGCGAGATTAAAATTCAGA
AAATAGAGACTGAGGGTGGCATTGGCTAGGAAAGGGCTTAATCAGGCCCT
GAGCTGGACCTCCAGCACAGAAGACTATTCTCAGTAGACAATGATGTTCA
GACAGTGACCCCTAGTTTTTGTTTAACCCCCCCACCCAACTGCTATCCTG
TTAGCAGCCAGGTGTGTGTATTGTCCTCTTGAAAAATACCCATAGGCTAT
GGGCAGCTGGACTGAATTGACCATCTGCCTTTCTGCACTCTTATAGCCAG
GTGCTGGCCTGGTCAGATGACCATGCCTGTGAATACATGCCTGAACATGG
TTTATAATGTATGGCTTGTACCGGTTTTCTGTTTCCGTCCTTAATGGTGT
ATAAGTCATGGAGTCCCCCATGAACATTGTTCCTATATGTCTAAGTTATT
TCCTTATTTTTTCTAACGAATAGTTTTTACTAGGTAAAGTCTGTACTTTT
TCTATAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n06.g1 MSMg01no068_n06.g1 CHROMAT_FILE:
MSMg01no068_n06.g1 PHD_FILE: MSMg01no068_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:24 2005
         (251 letters)



>mm_chr19_17040806_17041456
          Length = 651

 Score =  404 bits (209), Expect = e-117
 Identities = 241/257 (93%), Gaps = 9/257 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataagaaccagctaagatgctgcccttttcgctataggcctctagccaccaccaaggaa 60
           ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 382 aataagagccagctaagacgctgcccttttcgctataggcctctagccaccaacaaggaa 323

                                                                       
Query: 61  aggccagcaaggtttctctggtagccaaggagagagagaagatgtttcttcaattggggt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 aggccagcaaggtttctctggtagccaaggagagatagaagatgtttcttcaattggggt 263

                                                                       
Query: 121 aggaagccaatccaatctaccttactacaagccaggcgagattaaaattcagaaaataga 180
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 262 aggaagccaatccaatctaccttactacaagccaggcaagattgaaattcagaaaataga 203

                                                                       
Query: 181 ga---------ctgagggtggcattggctaggaaagggcttaatcaggccctgagctgga 231
           ||         |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 202 gagttgagagactgagggtggcattggctaggaaagggcttaatcgggccctgagctgga 143

                            
Query: 232 cctccagcacagaagac 248
           |||||||||||||||||
Sbjct: 142 cctccagcacagaagac 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)