Query= MSMg01no068_p21.b1 MSMg01no068_p21.b1 CHROMAT_FILE:
MSMg01no068_p21.b1 PHD_FILE: MSMg01no068_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:36 2005
(313 letters)
>mm_chr19_7258995_7259706
Length = 712
Score = 555 bits (287), Expect = e-162
Identities = 309/323 (95%), Gaps = 13/323 (4%)
Strand = Plus / Minus
Query: 1 acaggggatggctctgtagtgctcctgcctccactggaattatgggtgtttactcccggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggggatggctctgtagtgctcctgcctccactggaattatgggtgtttactcccggc 382
Query: 61 ctgtattctgcctgctctccttcacagcgtttcttgagacccggaagtgtccagccttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtattctgcctgctctccttcacagcgtttcttgagacccggaagtgtccagccttca 322
Query: 121 gcataggtatggggaggccagggcagcatgttcctgaccctcatggcccacaggctgcct 180
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 321 gcataggtatggggaggccag---agcatggtcctgaccctcatggcccacaggctgcct 265
Query: 181 agttggaggccaccaagaaggaagtgctcatggggcacggtggcaca--ctttttttttt 238
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 agttggaggccaccaagaaggaagtgctcatggggcacggtggcacatactttttttttt 205
Query: 239 tttttttttttttttt--------gagacagggtttctctgtatagccctggctgtcctg 290
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttttttttttttttttttttttttgagacagggtttctctgtatagccctggctgtcctg 145
Query: 291 gaactcactttgtagaccaggct 313
|||||||||||||||||||||||
Sbjct: 144 gaactcactttgtagaccaggct 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space: 213712
Effective search space used: 213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_p21.g1 MSMg01no068_p21.g1 CHROMAT_FILE:
MSMg01no068_p21.g1 PHD_FILE: MSMg01no068_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:37 2005
(436 letters)
>mm_chr19_7099262_7100097
Length = 836
Score = 797 bits (412), Expect = 0.0
Identities = 430/436 (98%)
Strand = Plus / Plus
Query: 1 ggtttcatatctggcacatgtgtacaaagcaggcaaaatactcatacacatttgaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtttcatatctggcacatgtgtacaaagcaggcaaaatactcatacacatttgaaaaat 260
Query: 61 aatacagaagtggagaaaaatattgaggaagactgggagaaaaagctacacaggagctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacagaagtggagaaaaatattgaggaagactgggagaaaaagctacacaggagctac 320
Query: 121 ataggcttacataagctcaaccactgacttttaagggctcaggggtcagacagacacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggcttacataagctcaaccactgacttttaagggctcaggggtcagacagacacaga 380
Query: 181 cctccaacttccctcacacattactactactgtcaacttagaatcttaattagaacatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccaacttccctcacacattactactactgtcaacttagaatcttaattagaacatta 440
Query: 241 acctgctgaggagtgtacaagaaagaggcttggctccctgcaaaggcttatagcaattcc 300
|||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 441 acctgcagaggagcggacaagaaagaggcttggctccctgcaaaggcttgtagcaactcc 500
Query: 301 aggtctcacctcaagtaaccctagcagaactcccaggcctcaccttgagtgccagctgaa 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtctcacctcaagtaaccctatcagaactcccaggcctcaccttgagtgccagctgaa 560
Query: 361 actccaggagcttggtgtagcaggcagctcggttgctgtacagtttggcatctctcgggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actccaggagcttggtgtagcaggcagctcggttgctgtacagtttggcatctctcgggt 620
Query: 421 tccttttaatggcttc 436
||||||||||||||||
Sbjct: 621 tccttttaatggcttc 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
