BAC Information

Click to search

BAC

Clone NameMSMg01-069O04
Chromosome19 (Build37)
Map Location 27,794,932 - 27,795,109
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O04.T7 (MSMg01no069_o04.b1)MSMg01-069O04.TJ (MSMg01no069_o04.g1)
ACCAG294038AG294039
length688674
length of high quality
(start - end)
181 (65 - 245)84 (112 - 195)
definitionCHROMAT_FILE: MSMg01no069_o04.b1 PHD_FILE: MSMg01no069_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:45 2005CHROMAT_FILE: MSMg01no069_o04.g1 PHD_FILE: MSMg01no069_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCG
GATTCTGGGAAGGCATTCACACTGTCATTTCTTCTTTCTTAAATACTTTT
GCGTTTCCATCCTGCCTGGCGCCTGCTTGAGAGAGTGTTTAATTCATCCT
CCTGATCCTAGTACTCTCCAGAATAAGGAATGTGCAGAAATCACCAGTAA
GTGCTTCCTCAGTGAGCCACTGCTTTAAGTCAGGAGCTCTGAGGAGAGCA
CAGGACAGAATTTCTCAAAAGAAGTTTAAGACATTGGTTTTTGCTTATAG
TCTAGAGGGATCTTTTAATACGTATCGTAGTAATAGAAACTTGAGATACA
GCTTAGAATTTTTGATTAGCCAGCCACTTGCTACTAAATGCTTTGTTTAT
CCTGCCCCCAGTTCCCACAGGAAGATATACTCTGTTGGGAAGGGCCAATG
AATAAGCGTACGCCTGTCAGGATTTGGACTGTTAGCTGAGTTATGTGGCG
CAATCTAGCTTGGCATTCTCGCTCTGTTTGACTACTTCGGATGTCTTCTT
CACTTTCTGTTAGCGCATTCCCTGCCTCTTGCTTTTTACATATCTGGTTC
TGGTCCGTTTATAATTGATGAATAGTTCGTTCCAAATTTTAGAGTTGGTT
TTCCTTTTATGATTTTGTAGCTCTCTTTGCCTTTTCTC
ACGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGACATGCCTATGAGACTATTTCACATTTGAAACCATG
GGAGGACCCGCCGGTGATTCTTAAAGCCTATACCTGTCTTCCTGTTTATC
CACTAGTGCAGCGGTGATGACAGTTGCCTTTCCTGTCTTCGCGATGTCGC
CCCTGATAATGACAGGTGTTTTCCGGCTTCACTGCTAACAACCCATCCAA
TGATGAGTGAAGAGGCAGCTTACAGCTGTAATAGCGCGTGCCTCGGCTAT
AGCTTTGTCGTTTGATCATCTCTCTTACTATCCGTGAGTCCGTTTTTTTT
ATTCCGCCCACCCACCCCCCGATTAGTGCTCTTCTCATGGGGCTGCTTTG
AGAGTCACAAAAAAAAAAAATTTCTCGTGATTGGAGGAAATTATACCATT
GATGTCCTTGTCACTTTCTGCTAATCCCCTGCTCTTACTCTTCTATCACC
ATCTCCATGTCATCTACGATAATCTACTCCTTTCCCTACTCCCTTCTGTG
CCTGCCTGTTCTCCCTACTCCTACTACCGCCATCCTTTTTATTTTTTTCT
CTACCCATTTATTCTTTACCCCTTTCCCTTTTATCAAAATCTTTAATTCT
CATCCAATTTATTTTGTGCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o04.b1 MSMg01no069_o04.b1 CHROMAT_FILE:
MSMg01no069_o04.b1 PHD_FILE: MSMg01no069_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:45 2005
         (181 letters)



>mm_chr19_27794728_27795309
          Length = 582

 Score =  306 bits (158), Expect = 7e-88
 Identities = 173/178 (97%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   acactgtcatttcttc-tttcttaaatacttttgcgtttccatcctgcctggcgcctgct 63
           |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 382 acactgtcatttcttcatttcttaaatacttttgcgtctccatcctgcctggagcctgct 323

                                                                       
Query: 64  tgagagagtgtttaattcatcctcctgatcctagtactctccagaataaggaatgtgcag 123
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 322 tgagagagtgtttaattcatcctcctgatcctggtactctccagaataaggaatgcgcag 263

                                                                     
Query: 124 aaatcaccagtaagtgcttcctcagtgagccactgctttaagtcaggagctctgagga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaatcaccagtaagtgcttcctcagtgagccactgctttaagtcaggagctctgagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 582
Length adjustment: 8
Effective length of query: 173
Effective length of database: 574
Effective search space:    99302
Effective search space used:    99302
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)