Query= MSMg01no072_e09.b1 MSMg01no072_e09.b1 CHROMAT_FILE:
MSMg01no072_e09.b1 PHD_FILE: MSMg01no072_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:57 2005
(549 letters)
>mm_chr19_57843449_57844398
Length = 950
Score = 1025 bits (530), Expect = 0.0
Identities = 542/546 (99%), Gaps = 1/546 (0%)
Strand = Plus / Minus
Query: 5 gaattcattac-attgacggtcttcaatcatatgatctgatttaaagacgttgtatgaag 63
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaattcattacaattgatggtcttcaatcatatgatctgatttaaagacgttgtatgaag 691
Query: 64 tgtacttggaaagagaattttccgcaacatgatatttaccctaaaatgtcagaaattttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgtacttggaaagagaattttccgcaacatgatatttaccctaaaatgtcagaaattttt 631
Query: 124 aaagaagcagctcttatttataaaggacacgctgatgtgtttttgcaaaatgtcagcccg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaagaagcagctcttatttataaaggacacgctgatgtgtttttgcaaaatgtcagcccg 571
Query: 184 ccatgcatagttaggttctgatacgacactggagataaacaaactggaaacgcatgcagg 243
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccatgcatagttaggttctaatacgacactggagataaacaaactggaaacgcatgcagg 511
Query: 244 gatgtgctgaaattatcagggtcatctgacaacctggaagtgaacgaggctgattcatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gatgtgctgaaattatcagggtcatctgacaacctggaagtgaacgaggctgattcatgt 451
Query: 304 cgctgtttggattatggcgattcagaaggctgacagaaaacagttttatacaatggaagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cgctgtttggattatggcgattcagaaggctgacagaaaacagttttatacaatggaagt 391
Query: 364 cagagaactagccagaccttggaaagaaacggattaggtcttgtgcaggaaatctgaaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagagaactagccagaccttggaaagaaacggattaggtcttgtgcaggaaatctgaaaa 331
Query: 424 cctgatatgatatattcctatttaattttaaaaataagtataaagggttcttttaaatta 483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctgatacgatatattcctatttaattttaaaaataagtataaagggttcttttaaatta 271
Query: 484 ttatgtgctaaggtcgactacgatagtctaccctaggagcatagacttcttcccaataat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttatgtgctaaggtcgactacgatagtctaccctaggagcatagacttcttcccaataat 211
Query: 544 tagcat 549
||||||
Sbjct: 210 tagcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_e09.g1 MSMg01no072_e09.g1 CHROMAT_FILE:
MSMg01no072_e09.g1 PHD_FILE: MSMg01no072_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:57 2005
(540 letters)
>mm_chr19_57732245_57733183
Length = 939
Score = 926 bits (479), Expect = 0.0
Identities = 526/543 (96%), Gaps = 7/543 (1%)
Strand = Plus / Plus
Query: 1 tctccagggttcatttgtctctttttgtttaatgtatgacatatttatagccacgacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctccagggttcatttgtctctttttgtttaatgtatgacatatttatagccatgacatt 260
Query: 61 catcttcttctagaaacacactgttttgttttt-ttaatcttttgtatttatagttttaa 119
||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 261 catcttcttctagaaacacactgtttt-tttttataaatcttttgtatttatagttttac 319
Query: 120 aatataatttttgttgtacttgttttgtttttcagaatctgggaaattaggcttttttgt 179
||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 320 aatataatttttgttatacttggtttgtttttcagaatctgggaaattaggc-tttttgt 378
Query: 180 cttaagaca--acgaacctgccttttgaagttgcttgagtgcacttaaggaaaatagttt 237
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttaagacagta--aacatgccttttgaagttgcttgagtgcacttaaggaaaatagttt 436
Query: 238 attacatagtgatttattaccgtttcacgtctacgtctatccttaactttctgcattgtc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attacatagtgatttattaccgtttcacgtctacgtctatccttaactttctgcattgtc 496
Query: 298 tgaagagaacagggttttgtgagacttcctctgggaaatgaataataacatcccaaacat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 tgaagagaacagggttttgtgagacttcctctgggaaatgaataataacatcctaaacat 556
Query: 358 gacccaagagattaggccacagaatgaagcagcttcctgagaccaagggcaggggaaatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gacccaagagattaggccacagaatgaagcagcttcctgagaccaagggcaggggaaatg 616
Query: 418 aatacaatcatagtaaaaatctcctcagaatgcatacaaagagcaaaggcattttcctgt 477
||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct: 617 aatacaatcatagtaaaaatcccctcagaatgcagacaaagagcaaagtcattttcctgt 676
Query: 478 tttggaggcaactctgactgaatgacaactgacagattttcttggtctgcaagctgtgtg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tttggaggcaactctgactgaatgacaactgacagattttcttggtctgcaagctgtgtg 736
Query: 538 cgc 540
|||
Sbjct: 737 cgc 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
