Query= MSMg01no072_j16.b1 MSMg01no072_j16.b1 CHROMAT_FILE:
MSMg01no072_j16.b1 PHD_FILE: MSMg01no072_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:24 2005
(323 letters)
>mm_chr19_34782113_34782835
Length = 723
Score = 524 bits (271), Expect = e-153
Identities = 319/355 (89%), Gaps = 32/355 (9%)
Strand = Plus / Minus
Query: 1 ctgacctccacactcgcactgtggactgtgtgcatctacacacatacactttcacaaaga 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 696 ctgacctccacactcgcactgtggaatgtgtgcatctacacacatacactttcacaaaga 637
Query: 61 ataagtaagtgtgatgaca--tgtgtgtgtatacacaatttacaaatacacatatatgtt 118
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ataagtaagtgtgatgacatgtgtgtgtgtatacacaatttacaaatacacatatatgtt 577
Query: 119 ------------------------------tatatatatgtatatatatatatgcacaca 148
||||||||| ||||||||||||||||||||
Sbjct: 576 tatatatatatatatatatatatatatatatatatatatatatatatatatatgcacaca 517
Query: 149 cacatgatatgactttagaggcctcactgaacagttttatgactggggttaggaatcctt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cacatgatatgactttagaggcctcactgaacagttttatgactggggttaggaatcctt 457
Query: 209 agagtttttcagcaaggagaatttgtttagaggaacacaagattcttttttgttttagga 268
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaatttttcagcaaggagaatttgtttagaggaacacaagattcttttttgttttagga 397
Query: 269 atcataaatctgggaaagggactaacaaggacgagggggatgatggggatggtgg 323
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 396 atcataaatctgggaaagggactaacaaggaggagggggatgatggggatggtgg 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_j16.g1 MSMg01no072_j16.g1 CHROMAT_FILE:
MSMg01no072_j16.g1 PHD_FILE: MSMg01no072_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:24 2005
(505 letters)
>mm_chr19_34647874_34648778
Length = 905
Score = 946 bits (489), Expect = 0.0
Identities = 501/505 (99%)
Strand = Plus / Plus
Query: 1 acctctggatgggccattgcgaactaccgtctggatgactggccagcaaggaattactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctctggatgggccattgcgaactaccgtctggatgactggccagcaaggaattactgc 260
Query: 61 attgactctctggagcaagccattcaactgtctcctgacaacacttatgttaaagtcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgactctctggagcaagccattcaactgtctcctgacaacacttatgttaaagtcctc 320
Query: 121 ttggcactgaagcttgacgaggtacataaaaaccaagcaatggccctggttgaagaagcc 180
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ttggcactgaagcttgacgcggtacataaaaaccaagcaatggcgctggttgaagaagcc 380
Query: 181 ttaaagaaagacccaagtgcaatagatacactcctcagggcagccaggttttattgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagaaagacccaagtgcaatagatacactcctcagggcagccaggttttattgcaag 440
Query: 241 gtatatgacacagacagagctatacagttgcttagaaaggctttggaaaagctgccaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatatgacacagacagagctatacagttgcttagaaaggctttggaaaagctgccaaac 500
Query: 301 aacgcctatgtgcattactatattgggtgctgttataggtcaaaagtccatcatatgttg 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacgcctatgtgcattactatatggggtgctgttataggtcaaaagtccatcatatgttg 560
Query: 361 aacagaagggaaatggtatttagtggggataggaagaagttagaggaactaatacaacta 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacagaagggaaatggtatttagtggggataggaagaagttagaggaactaatacaactg 620
Query: 421 gcagtgaatcacttacggaaagcagaggaaatcaaggagatgcttgaatattcctgtagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagtgaatcacttacggaaagcagaggaaatcaaggagatgcttgaatattcctgtagc 680
Query: 481 ttccttgctgatctttatatcatag 505
|||||||||||||||||||||||||
Sbjct: 681 ttccttgctgatctttatatcatag 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
