BAC Information

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BAC

Clone NameMSMg01-072O10
Chromosome19 (Build37)
Map Location 5,171,926 - 5,172,511
singlet/doubletsinglet
Overlap genePacs1
Upstream geneAI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424
Downstream geneSf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072O10.T7 (MSMg01no072_o10.b1)MSMg01-072O10.TJ (MSMg01no072_o10.g1)
ACCAG296330AG296331
length700703
length of high quality
(start - end)		589 (43 - 631)208 (71 - 278)
definitionCHROMAT_FILE: MSMg01no072_o10.b1 PHD_FILE: MSMg01no072_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:48 2005CHROMAT_FILE: MSMg01no072_o10.g1 PHD_FILE: MSMg01no072_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGTCCTCTTCGCAATCACTTTACCAATTGAACTCTCTCCTCAATCTC
CTTTTTAAACTAGTTAGAGAGAGTGTGTGGGGGTCAAAAAATAACTTCGA
GGAGTCGGTTCTCTCCTGCCACCTTGTAGGATCCAAAGGTGAAAACTGAA
CTCTACCCACTCTACTCCTCAAGGATCCGCAGATACTAGGCCTTACAGAT
TAATAAAGTTTGGAAACCCGGACGTTTTTAAAGGGACATTCTCCAGATGA
AGCAGAATTTTAAAAATTAAATTATTCCTGTAGAGAGAATCCTTTGTGCA
CTGTGTGAAAGTTCCACCTGACAAAAAGCCTGTGGACAATGAATTGGGCC
CAGAAATAGGAGGTGGAAGTTCTGGTAGAGAGAGAAAGAGAGGAATTCTG
GGGGATTCACCCTGAATGCTGGAGGAGACAGACACATGAAACTGAGGGAG
GCAACTAACCACGTGGAAGACATAGAATAGTTTAGAAGTAATGAGCTGAT
CGAGGATCAAGTTGAAGACTAGGGCTTGAACATTTATTCATATATATGAA
GTCTCAGAGACATTATTTCCGGGAACAAAGAGGCCAGGGTGGAAAAGCCA
TTCGTTCCAATTCCACAAAGCACTTTATTCAAGTAAAGCTACAATTGGAT


TGAATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTATGTAGCCCAGGCTGGTCTCTTACTCA
CACTCACAGATATCCGCCTGCCTTAGCCTTTGAAGTGCTGAGTACAGCAC
CAGACCTGACTTCCATCTTTTAGAAAAGCAATCAACGTTACTGTGTGTGC
ATACTTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTTGCGTGCGTGTGTGTGCGCCTGCGTGTGGAATTGGTTTTCTCTTTT
CTCCTTTATGTGGTTTCTATGGATGTGACTCATTCAGGTTTGTACAGCAA
GGATTTTTATCAGCTGCGCTATTTTGTTGGCCCTCACCTGTTCTTTTGAC
TTCTTCTCTGTCGCAAACCTTTCTATGAACCTTTATCCTCTTTGTCCACT
AATGCTTCTTTATGATCCTTGTCTTAACGTATTCTTTACTTTACTCTCTT
GTATCCTTTATACATTGTGTTTTGTTTCCTCTGTTCTTGACTCTCTCCTA
CCTTTTCATTATCTTTTCTTTTGTTCCTTCTTCTTTCTCTGATTTTTTCC
TCTTACTTATCTCGCCTATCTTTTTTATTACTATTCTGTTCCCCTACTTT
TTTTTTTTTACCCCCCTCCTCTTTTTTTCTCTTCAACAATCCTCCCTTTC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_o10.b1 MSMg01no072_o10.b1 CHROMAT_FILE:
MSMg01no072_o10.b1 PHD_FILE: MSMg01no072_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:48 2005
         (589 letters)



>mm_chr19_5171723_5172711
          Length = 989

 Score = 1112 bits (575), Expect = 0.0
 Identities = 584/587 (99%), Gaps = 2/587 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggtcctcttcgcaatcactttaccaattgaactctctcctcaatctcctttt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggtcctctt-gcaatcactttaccaattgaactctctcctcaatctcctttt 262

                                                                       
Query: 64  t-aaactagttagagagagtgtgtgggggtcaaaaaataacttcgaggagtcggttctct 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taaaactagttagagagagtgtgtgggggtcaaaaaataacttcgaggagtcggttctct 322

                                                                       
Query: 123 cctgccaccttgtaggatccaaaggtgaaaactgaactctacccactctactcctcaagg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctgccaccttgtaggatccaaaggtgaaaactgaactctacccactctactcctcaagg 382

                                                                       
Query: 183 atccgcagatactaggccttacagattaataaagtttggaaacccggacgtttttaaagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atccgcagatactaggccttacagattaataaagtttggaaacccggacgtttttaaagg 442

                                                                       
Query: 243 gacattctccagatgaagcagaattttaaaaattaaattattcctgtagagagaatcctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacattctccagatgaagcagaattttaaaaattaaattattcctgtagagagaatcctt 502

                                                                       
Query: 303 tgtgcactgtgtgaaagttccacctgacaaaaagcctgtggacaatgaattgggcccaga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtgcactgtgtgaaagttccacctgacaaaaagcctgtggacaatgaattgggcccaga 562

                                                                       
Query: 363 aataggaggtggaagttctggtagagagagaaagagaggaattctgggggattcaccctg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aataggaggtggaagttctggtagagagagaaagagaggaattctgggggattcaccctg 622

                                                                       
Query: 423 aatgctggaggagacagacacatgaaactgagggaggcaactaaccacgtggaagacata 482
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 623 aatgctggaggagacagacacatgaaactgagggaggtaactaaccacgtggaagacata 682

                                                                       
Query: 483 gaatagtttagaagtaatgagctgatcgaggatcaagttgaagactagggcttgaacatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaatagtttagaagtaatgagctgatcgaggatcaagttgaagactagggcttgaacatt 742

                                                          
Query: 543 tattcatatatatgaagtctcagagacattatttccgggaacaaaga 589
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tattcatatatatgaagtctcagagacattatttccgggaacaaaga 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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