BAC Information

Click to search

BAC

Clone NameMSMg01-074B05
Chromosome19 (Build37)
Map Location 51,860,860 - 51,861,156
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928
Downstream geneLOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074B05.T7 (MSMg01no074_b05.b1)MSMg01-074B05.TJ (MSMg01no074_b05.g1)
ACCAG297216AG297217
length710667
length of high quality
(start - end)
318 (49 - 366)300 (56 - 355)
definitionCHROMAT_FILE: MSMg01no074_b05.b1 PHD_FILE: MSMg01no074_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:20 2005CHROMAT_FILE: MSMg01no074_b05.g1 PHD_FILE: MSMg01no074_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTATGGAGACCAAGCTGGCCTATAACTCAGAGATCTGCCTA
CCTCTGCCTTCCAAGTTCTGGGGTGAAAGGTATGTGCTGCCATTGAGTGG
CACATGCATAAATTTTTAAAAATTTTTTTATTAGGTATTTTCCTCATTTA
CATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCACCCCCTT
ATCCACCCACTCCCACTTTTGGCCCCGGCGCTCCCCTGTACTGGGGCATA
TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGACTAGG
CCATCTTTTGATACTATGCCCCAACACACCTTTTTAAAAGGAAGAAAAAG
CTTATTTGACCCATGCCCATGGATGACAGGATTCATTGCTCTAAAGCCTA
TGGCAAAGCAGGCACGTTATTGATGTTTTGTAATATATCACCATAATGTG
TTCGTTAGGGTATTCGAACTCCCAATTTACCTCCTACACACTAATTTAAA
TACACAATATAACATAAATATATTTTAATATATGTACAAGAGGAAGTAGC
TATTATTTAATTCCTATTGAACTAACTCGATCTTCAATTATCCATATCAT
ATAACCATATACTCTAATATTTATTATATTACTCGTACTTTGAATTTTAC
TTACCTCACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGAAACATATGGCCTGATTAAAAGTAGATCTTGTTACCTTTAAAT
ACACGGGTTGAACATTCTTTATTTTGAATTTTGAAACATTATTTTATTTT
TATGTGCTATATTTAAAAATTCAAATTAAAATTTTACACACAAAAATTAA
CATGTTCCAAATTCTATACATATCAACGAAGAACATCTATACAGTCAGAC
TAGCCGTTCTGAAGCTGTGGCCCTTCGCAGAGGATTTTGCACTTTCACTA
CTGAATATACTTTTTGCACACTTATCAACCACAAAACTACAAAATCCATG
ACAGCTAAAAGTAGAAAAGCAGTTAGCTTTATGTATGCTTTCATATTTTC
TGTGCATTCCTTGCACTAAGTCCTTCATATCTCCAAATATTTAGCCCTTC
TTGTTTTCATTTGACATGGGATAATGCACATTTGTTTAACAGATTTCCAA
ATCTAAACTTCTAGGATGACTAAATAACAAAAGAACTCACTATCCAAACA
TATATGTTAAGAACAAATTTAGAACATCTCTTAGGAAGGAATGGGACCCT
GAATCTTGTGGTAAAAACTGGTAGGAAGATGCGGATGAAAAGGAACGTCT
GACATGGTAGGCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_b05.g1 MSMg01no074_b05.g1 CHROMAT_FILE:
MSMg01no074_b05.g1 PHD_FILE: MSMg01no074_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:20 2005
         (300 letters)



>mm_chr19_51860661_51861360
          Length = 700

 Score =  542 bits (280), Expect = e-158
 Identities = 293/298 (98%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaac--atatggcctgattaaaagtagatcttgttacctttaaatacacgggttgaac 58
           ||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 200 agaaacttatatggcctgattaaaagtagatcttgttacctttaaataca-gggttgaac 258

                                                                       
Query: 59  attctttattttgaattttgaaacattattttatttttatgtgctatatttaaaaattca 118
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 259 attctttattttgaattttgaaacattattttatttttatgcgctatatttaaaaattca 318

                                                                       
Query: 119 aattaaaattttacacacaaaaattaacatgttccaaattctatacatatcaacgaagaa 178
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 319 aattaaaattttacacacaaaaattaacatgatccaaattctatacatatcaacgaagaa 378

                                                                       
Query: 179 catctatacagtcagactagccgttctgaagctgtggcccttcgcagaggattttgcact 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 catctatacagtcagactagccgttctgaagctgtggcccttcgcagaggattttgcact 438

                                                                     
Query: 239 ttcactactgaatatactttttgcacacttatcaaccacaaaactacaaaatccatga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcactactgaatatactttttgcacacttatcaaccacaaaactacaaaatccatga 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)