BAC Information

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BAC

Clone NameMSMg01-074M08
Chromosome19 (Build37)
Map Location 29,870,747 - 29,870,875
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik
Downstream geneRanbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074M08.T7 (MSMg01no074_m08.b1)MSMg01-074M08.TJ (MSMg01no074_m08.g1)
ACCAG297747AG297748
length723725
length of high quality
(start - end)
---129 (123 - 251)
definitionCHROMAT_FILE: MSMg01no074_m08.b1 PHD_FILE: MSMg01no074_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:14 2005CHROMAT_FILE: MSMg01no074_m08.g1 PHD_FILE: MSMg01no074_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGACTCCTATTTCCAGAGGACCGCGGAATTCAAA
TATTTTACCTCTGAATCGCCTTTGTAGGACCACACATGTCAATCACTTGT
ACAGCGGATCTCACCCTATGGGTTCTTGATCCCTTTGAAGACGGGAAGAT
TCTTTTACTGGGTCACATATCAGGTATTTACGTTACGATTCGTAACTAGC
AAAATTATAGTTGTGAAATATCTACAATATTTATGGATGCAGTCACCACG
TGAGGAACTGTATTAAAGGGTCACAGCATTAGGACGGCTGAGGACCACTA
CTCTAAGAGAATTATGATTAGCTAATTCGTAATATAAATACCTTCAGACT
AGATTCCCATCTACCGAGGACTGAACGCTGCTCTCCACTGTTGCATTATT
TGCTTCCGCCACAGCATCACAATATTGTAATCAAGGTTGGCTTCCCAGTT
CTGATCTGTCTGCCCCAGTCTCCTCAGTGCTGAGATCAGTTATGTGTCTC
TGCGTCCAGTCCTTTTTCCCTCCTTCCTCCCTCCTAACTTTACCTACCCT
GTTTTTAAATGCCCCTTATTTTTTCTTCCACTTTTATGTGCTTTAACCCC
CTAGCCCGATCTTCGTTTCCTCGCTCCCCCCTCCGCTATTTTATTCCCCC
CCTCTTCCCTCGTGTTCCAGCCCCCTTTTTTTTCGCCTGTCTCTCCCGCC
CCGCCCCCCCTTTATTTCCTGTT
ACATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGTTTTGTTATTCTTGTGTGCAACCAG
TTGTTGCAACATCTCTTCCCTCCATTGTTTTGAAATACCGACTTGATGAT
AACATCCTGGGTGTATTTTGAACTCTCCACTCTGTTGCTGATCTTTATTC
ATTTGTATTCCTTTAATTTTGTGATTTTAAATTTCTTTTTGTGTGTGTTG
AGGAGAGAGGGAGAGAGAGTATGCATGCATGTGCATTCTGCTCACATGTG
TGTGGAGGCCCGAGTACATCTTATGTGTCATCCTCAGGGACAATGTCCCC
CTCTTTTTTATTAGCCCTCCACTATTGAACACCAAGCCCAGGGATCTGCC
TTTGTCCATAATGCTGAAAATAAAGAAATATATTGCCCTACCCAGATTTT
CTTACCTGGGCTTCCATGGTAAAAGTTAGCCCTCTTATTTGTATAAATAG
CCCTTTTTACTGTAAGAACCCTTCCTCTTCATATTCTATAATTCCTTTAA
CATCTGGAAAAATTGGTTCTTCTATCCAAACAGGCTTTTTATTCCGAAAT
CACTTCTCCTCCCACTTTTACATTTTCCTGTTTTCCCCTTCTATCCCCCT
TTTTCTATTGGCCCCTTCCTTTCCCTCTTATTTTTTTTGGCCTTACTAAA
ATTTCGATAAACACTTTATATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_m08.g1 MSMg01no074_m08.g1 CHROMAT_FILE:
MSMg01no074_m08.g1 PHD_FILE: MSMg01no074_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:15 2005
         (129 letters)



>mm_chr19_29870547_29871075
          Length = 529

 Score =  250 bits (129), Expect = 3e-71
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgttttgaaataccgacttgatgataacatcctgggtgtattttgaactctccactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cattgttttgaaataccgacttgatgataacatcctgggtgtattttgaactctccactc 270

                                                                       
Query: 61  tgttgctgatctttattcatttgtattcctttaattttgtgattttaaatttctttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgttgctgatctttattcatttgtattcctttaattttgtgattttaaatttctttttgt 210

                    
Query: 121 gtgtgttga 129
           |||||||||
Sbjct: 209 gtgtgttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)