BAC Information

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BAC

Clone NameMSMg01-074N21
Chromosome19 (Build37)
Map Location 12,285,931 - 12,286,210
singlet/doubletsinglet
Overlap genenone
Upstream geneMs4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431
Downstream geneOlfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074N21.T7 (MSMg01no074_n21.b1)MSMg01-074N21.TJ (MSMg01no074_n21.g1)
ACCAG297820AG297821
length677684
length of high quality
(start - end)
295 (127 - 421)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no074_n21.b1 PHD_FILE: MSMg01no074_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:22 2005CHROMAT_FILE: MSMg01no074_n21.g1 PHD_FILE: MSMg01no074_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGATTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTG
TCAAATGATTTCTATGTTTCTCCCGAGATGATCATGTGGTTTTTGTCTTT
GAGTTTGTTTATGTTGTGGATTACGTTGATGGATTTCCATATATTAAACC
ATCCCTGCATCCCTGGAGTGAAACCTACTTTGTCAGGATGGATGATTGCT
TTGATGTGTTCTTGGATTCAGTTAGCAAGAATTGTACTGAGTATTTTTGC
ATCGATATTCATAAGGAAAATTGGTCTGAAGTTCTCTATCCTTGTTCAGT
CTTTCTGTGTTTTATGTATCATAGTAATTGTGGCTTCATAGAATGAGTTG
GGTAGAGTACCTTTTACCCCTATTTTGAGGAATAGTTTGTGAAGAACTGG
AATTAGATCTTCTTTGAAGATCTGATAGAACTCTGCACTAAACCCATCTG
GTCATGGGCTTTTCTTCTTTTTTTTTTTTTTTCTTTTTTCTTTTTTCTTT
TGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAGGGGATATAGGA
CTGTTTAGATAATTAACCTTGATCCTGATTTAACTTTGGTACCTGGAATC
TGTCTTGAACCTTGACCATTTCATGCA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGTATTGTGTGGGTTTAAGTGAGTG
ATGGAATGGTGGTAGTACACCAGCTAAAAGTTTACTCTGGTATTTCTGAG
TATTTCATTGGAACTATTTTCTCTAGGTACACATAATCTTCACCATCATG
AAACATGAATGATTTCCTTACACAATACCTGGTTTATAGCCTTGGGAATG
AAATATTTACATGAGTACATTGATAAGCATGGCCACTGAAATGAAAATGA
TAGAATGTTATTATCTTCTCCAGATCCAAGAGTCATGATTTACACCTCTA
ATTCCAGCATTAATAGGGCTGGAGGATTTCATAGGGCTTCAGACCAACTT
GGGCTACAGTTTGACATTATGATAGAAACAAATAATCAAAGGCTCAAACA
AACCCATTCAAGCAAACTCCCTTCTTGAAACAGGGAATCCTAAGACCTTT
ACCTGAGATGATATCCACAAGTCTTTTTCCACAGCTTCATTTAATAGTAC
AATGTGAATGTTTTTGCTTTTGTTCACATTATTTTTTTCTTGTCTTATAC
ACTAAGTTCCTGCTTCACTATCATTCCCCTTTTCACAATCAAATTATTTA
CCTTTCACTTCTCTCCTTTTTTTTTACCCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_n21.g1 MSMg01no074_n21.g1 CHROMAT_FILE:
MSMg01no074_n21.g1 PHD_FILE: MSMg01no074_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:22 2005
         (281 letters)



>mm_chr19_12285730_12286410
          Length = 681

 Score =  487 bits (252), Expect = e-142
 Identities = 273/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   agtattgtgtgggtttaagtgagtgatggaatggtggtagtacaccagctaaaagtttac 61
           |||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||
Sbjct: 202 agtattgtgtgggtttaagtgagtgatggaatggtggtagtagaatagttaaaagtttac 261

                                                                       
Query: 62  tctggtatttctgagtatttcattggaactattttctctaggtacacataatcttcacca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 tctggtatttctgagtatttcattggaactattttctctaggtacacataaccttcacca 321

                                                                       
Query: 122 tcatgaaacatgaatgatttccttacacaatacctggtttatagccttgggaatgaaata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcatgaaacatgaatgatttccttacacaatacctggtttatagccttgggaatgaaata 381

                                                                       
Query: 182 tttacatgagtacattgataagcatggccactgaaatgaaaatgatagaatgttattatc 241
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 382 tttacatgagtacattgataagcatggccactgaaatgaaaatgatagcatgttattatc 441

                                                   
Query: 242 ttctccagatccaagagtcatgatttacacctctaattcc 281
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atctccagatccaagagtcatgatttacacctctaattcc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)