Query= MSMg01no076_e02.b1 MSMg01no076_e02.b1 CHROMAT_FILE:
MSMg01no076_e02.b1 PHD_FILE: MSMg01no076_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:10 2005
(370 letters)
>mm_chr19_59275436_59276205
Length = 770
Score = 687 bits (355), Expect = 0.0
Identities = 358/359 (99%)
Strand = Plus / Plus
Query: 4 ggaattcagtgaggtgcttaaataaattgtgaagatttgaaaactgggtttcagttattt 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgaggtgtttaaataaattgtgaagatttgaaaactgggtttcagttattt 263
Query: 64 cttttgaattttgaattagttctaaaagactggaaccagggaaagtttttgcccaccttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttttgaattttgaattagttctaaaagactggaaccagggaaagtttttgcccaccttt 323
Query: 124 tgcagtgctgggaggccaaacttagggcttcatgtctccttggccaccatctattattga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcagtgctgggaggccaaacttagggcttcatgtctccttggccaccatctattattga 383
Query: 184 gaaattgtcctagccatgtgtggtcagctttttatcccaagtccatggtgcctttagcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaattgtcctagccatgtgtggtcagctttttatcccaagtccatggtgcctttagcat 443
Query: 244 attcagaagccaaagatggccagaatgaaacaaagttacttagttaggaccccaagtttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attcagaagccaaagatggccagaatgaaacaaagttacttagttaggaccccaagtttc 503
Query: 304 tctaaggatactcctggcttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctaaggatactcctggcttgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space: 274721
Effective search space used: 274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_e02.g1 MSMg01no076_e02.g1 CHROMAT_FILE:
MSMg01no076_e02.g1 PHD_FILE: MSMg01no076_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:10 2005
(552 letters)
>mm_chr19_59461814_59462765
Length = 952
Score = 1031 bits (533), Expect = 0.0
Identities = 550/561 (98%), Gaps = 9/561 (1%)
Strand = Plus / Minus
Query: 1 caggcctgaaaggcagagaaaagggtctctaactggctacttgcaagcatgcagagctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 caggcctgaaaggcagagaaaagggtctctaactggctacttgcaagcatgcagagctct 671
Query: 61 tcagcatgtacctgttccctgaaacagtctgactggaaggaccacacacacacattcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcagcatgtacctgttccctgaaacagtctgactggaaggaccacacacacacattcaca 611
Query: 121 tcagtgcagtgggcaatggtgagttgtcgtctaactgacaaagtggaaggccccactttg 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 610 tcagtgcagtgggcaatggtgagttgtcatctaactgacaaagtggaaggccccactttg 551
Query: 181 tcctcacctgaggtccagcataattcaaaaagcaccttccaatctttgtttgtatctatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcctcacctgaggtccagcataattcaaaaagcaccttccaatctttgtttgtatctatg 491
Query: 241 aagcagagacctgtggaaagcatcgtcctccttcccaggggcacaacccctgggtctgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aagcagagacctgtggaaagcatcgtcctccttcccaggggcacaacccctgggtctgcc 431
Query: 301 aattttagtgtggcctgcaaggtgtggctggtctttgcagtctgaagcccaccaccacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aattttagtgtggcctgcaaggtgtggctggtctttgcagtctgaagcccaccaccacct 371
Query: 361 tctgtgtgaaactctagccacacggttgcttctgaggtgctgtttcctgcacccatagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctgtgtgaaactctagccacacggttgcttctgaggtgctgtttcctgcacccatagtt 311
Query: 421 ttgctccacaaacacttcctatccctagctgtgtagccagctccatcccaaccttcagaa 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 310 ttgctccacaaacacttcctatccctaactgtgtagccagctccatcccaaccttcagaa 251
Query: 481 ccatgtgctctaggatgctttgggttgcaagatatagatactggctcaga---------g 531
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 250 ccatgtgctctaggatgctttgggttgcaagatatagatactggctcagattactgaagg 191
Query: 532 ttctaggtcagctttcagata 552
|||||||||||||||||||||
Sbjct: 190 ttctaggtcagctttcagata 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
