BAC Information

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BAC

Clone NameMSMg01-076O05
Chromosome19 (Build37)
Map Location 49,451,451 - 49,451,601
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076O05.T7 (MSMg01no076_o05.b1)MSMg01-076O05.TJ (MSMg01no076_o05.g1)
ACCAG299358AG299359
length1,055867
length of high quality
(start - end)
---151 (131 - 281)
definitionCHROMAT_FILE: MSMg01no076_o05.b1 PHD_FILE: MSMg01no076_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:02 2005CHROMAT_FILE: MSMg01no076_o05.g1 PHD_FILE: MSMg01no076_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACATATCTTATTCCCCTAACATAAAAATATANNNNNGGGGNNNNTTAAA
ATAAGNCGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAG
AGGATCCGCNNGGAATTCCTTTGTATCACCCTACGATCTTCCTTTCTCAC
TGTAAGGGTCATTGTTGTCATCCATGTATGCCATATACGGTAGAAACACA
AACCAAAGGCAAGGCAACAATCATAGCTTTAAGTGCTCTCAGGTAGTTGA
CTGCAAATCAAGACATCGTTTGACCCACAGGATCTCTTCAGCCTCATTAC
ATAAACTGTAACCAAGAACGCTCATGGGATGAAATGCGATATGAGATAGA
CCACGAAAGATGCTCTCATTATCTTTCCGGGTATGAACTATAGAACTATT
GCAAAATAGAATCGGTAAAAATGTACATCTAGGCAAGCTTGATTTAACCT
AGCAGTGTTGTGTTCATCCTCGATTATCCACAGAACAGTTTTGTATAATC
TTTGAGTTAATGTATGAAACAAATCCTGTTTAAAAATATTAATAGAACCT
AGATCTCGTTGTAGTAATAGAACATCAAGAAAGCTTTTATCTAAGAATAC
ATGCTAATTGAATTAAGCTAAATCAATTTATACTTTGGTATTAATCACGT
ATTATTATAATTACGCTCATTAGCTCTTACACTATTTTCTATACTCTGCT
ACTGTGTCCGACATCTGAATCTTCTATTCCTACCACACGCTTGCGCTCTA
TCATTATGATAATGATNGTCTCATACAATAAACCAACATAATTAAGTGTC
ACGCCTATTACTCCTAATAATTTGGCAAATCCGTACTATATGACATCTTA
AATTGGATCGGGTTTCTATACACACAGCACATATACATTTTCAACACACT
ATTGTGGTGTCTCTCTCTTATCATCTCGTTCTCATTTTGGCAGTATATGG
CTTGTAGTACNCTACCCCCACACCAACTCATGATTATGTGTACTGGCTAC
TCTATACATAATAAAACAAAGAAGAAATCACGGTGCCTGTNAAAGCGAGG
AGTAT
ATAAACTAATTCGATCACACATATTTTAATCTACTTTTATCTTTTTTACT
TTNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCTGTGGTAAGAAGGA
CACTGAGTCTCAAGAAGAACCCCTAAAAGGCTGGTAATTGAGTTCTTCAT
GGAACTGCACATAGTATTTAAAATCTCTTTAAGAAAGAATAAGCCACATC
CTAATGGACTAGGGTGACTGGGGTGAACTGCAAGTGTCAAGGAGGAAGGT
GAGGAGGAAAGAGGAGGAGACAGAGAGGGGAAAGGTGTACATAGAGAGGT
AGAGGTAAAGTCTTTGCTTTATTTTCCCTCCTTTTTTCTCTTCATTCTTT
CTTCACAATCTTATAAACTTTTTTATTTTTCTCTTACTTTATTCCTCTCA
CTTTCTATATTCTTCTTAATCTTTAGTCGTTGTTGATTTATAATATTATT
AATTAGGTAAATTAACCACCTCTTATTCTTTTTCAATACGGCTTTTTATT
GCATTTAATTAATTTATCCTCATTTTGTGTCTTCTCAAACGGTGCCCGTT
TATAATTTCTTTATTTTTCGCCTCTCCTTTTTTCTCTTACTTCCCCTTTA
CTTTAAACCCCCTTTTTACCTCATATAAAATAAAAAAAAACTTCTCTGAC
TATTGCTTCTTACTATAAAATAAAAAATTACTCTTCCTCCGTTTGTTATC
TCTTTTGTTAATTCATCACAAACATATTAATAAAATTATATTTGATATTT
AGTAAACTATGATTAATATATTATCTTTTTTTCCCCTTTCTCTTTCCTCT
TCTCCTCCTCTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_o05.g1 MSMg01no076_o05.g1 CHROMAT_FILE:
MSMg01no076_o05.g1 PHD_FILE: MSMg01no076_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:02 2005
         (151 letters)



>mm_chr19_49451251_49451801
          Length = 551

 Score =  284 bits (147), Expect = 1e-81
 Identities = 150/151 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctctgtggtaagaaggacactgagtctcaagaagaacccctaaaaggctggtaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgtctctgtggtaagaaggacactgagtctcaagaagaacccctaaaaggctggtaattg 292

                                                                       
Query: 61  agttcttcatggaactgcacatagtatttaaaatctctttaagaaagaataagccacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agttcttcatggaactgcacatagtatttaaaatctctttaagaaagaataagccacatc 232

                                          
Query: 121 ctaatggactagggtgactggggtgaactgc 151
           |||||||||||||| ||||||||||||||||
Sbjct: 231 ctaatggactagggggactggggtgaactgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)