NNNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCC
GCGGAATTCTCATCACAGTGCTGCCAAGGAAGGGACTGCTTCGGGTTCCT
TGTGGTGGGCTGGGCTGACAGAGCAGGCCCTGTGGCCGTGGTTCTTCTGT
TCACAGTATGACTAAGCAGGCTATAAGGAAGCACCATGTGGGTCCAGTTG
GGGAATTGCTCTATGCAACGGCCCAAGCTGTTAAGGACCATCAAGGTCAT
GAAAAACAAAGACCAAGAAACTTGTCCAGATTGGAGGAAACCTGAACACA
CTTGACAAGAAGTACAAGGAAATTTGCTGGGTAGATCTTAGCCTTAGTGA
GTTGTTGAGTGTTAATGGAGTCTGTGCTGTATCAGTGCTGATGCTATGGT
CTGTGGCGGGGGGCTATATGATGGCTATAAAATAGTGTCTTTGTCAACAT
TCACACTGGATATTTAGTGTGATAGAACACTGTTTCTGCAGCTTTCTGAT
TGTTCAAAAGAACTCAAGATTAGAACAGTAGCCAGGTGTGGTGGCGCACA
CCTTTAATCCCAGCACTCGGAAAGCAGAGGCAGGCGGATTTCTGAGTTCG
AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG
AGAAACCCTGTCTCGAANAATCAAAAAAAAAGATTAGAACAG

CCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCAGGAAGAATTTATTAACATAAC
GTCACATAACTTTTAATTTCAGCATTTGGGAAGCAGAGGCAGGAGGACCT
CCTGTAAATCTAGGTTACCCAGTGCTACAAAGCAAAACCCTATCTCAAAC
CACAAAAAAACAAACAAACAAACCAGGCAGGTGGGTGGATGGATAGATGA
TAAAATAGGTAGACAGAATAGACAGACAGATAGACAGATTCTTCACTAAT
TAAAACAAGAGCATAAAGAGGTTATGTGGATAAAGACAAGAATTGAAGCA
GGGTATAGTGATGTCTGCCTCTAATCCCAGCACTTGGGAGACAGAAGCAA
GCAGATCTTTGTGAGTTCCAGGAGAGCCAGAGGACATCATGAGACCCTGT
GTGTTGGTGGGGGTAGAGATAGGAAGAATGATGACAATAATGACAACAAC
AACAAAGGAAGGAGGCGGGGAGGAGATAGAAAGATGGCTCAATGGTTAAG
AGTGTTTGTTCTTGCAAGGGACTGGGATTTTCCAGAACCCACATGGAAGC
TCACGAATATCTTTAACTCCATTTCTAGGGTATCTAATACCCTCGTCTAA
CCTTCAAGAACACTGCGTATATGTAGTTCTCACATGCAT

Query= MSMg01no078_m24.b1 MSMg01no078_m24.b1 CHROMAT_FILE:
MSMg01no078_m24.b1 PHD_FILE: MSMg01no078_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:15 2005
         (645 letters)



>mm_chr19_41540838_41541882
          Length = 1045

 Score = 1195 bits (618), Expect = 0.0
 Identities = 635/641 (99%), Gaps = 4/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctcatcacagtgctgccaaggaagggactgcttcgggttccttgtggtgggctgg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcatcacagtgctgccaaggaagggactgcttcgggttccttgtggtgggctgg 266

                                                                       
Query: 67  gctgacagagcaggccctgtggccgtggttcttctgttcacagtatgactaagcaggcta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gctgacagagcaggccctgtggccgtggttcttctgttcacagtatgactaagcaggcta 326

                                                                       
Query: 127 taaggaagcaccatgtgggtccagttggggaattgctctatgcaacggcccaagctgtta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaggaagcaccatgtgggtccagttggggaattgctctatgcaacggcccaagctgtta 386

                                                                       
Query: 187 aggaccatcaaggtcatgaaaaacaaagaccaagaaacttgtccagattggaggaaacct 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggaccatcaaggtcatgaaaaacaaagaccaagaaacttgtccagattggaggaaacct 446

                                                                       
Query: 247 gaacacacttgacaagaagtacaaggaaatttgctgggtagatcttagccttagtgagtt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaacacacttgacaagaagtacaaggaaatttgctgggtagatcttagccttagtgagtt 506

                                                                       
Query: 307 gttgagtgttaatggagtctgtgctgtatcagtgctgatgctatggtctgtggcgggggg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gttgagtgttaatggagtctgtgctgtatcagtgctgatgctatggtctgtggcgggggg 566

                                                                       
Query: 367 ctatatgatggctataaaatagtgtctttgtcaacattcacactggatatttagtgtgat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctatatgatggctataaaatagtgtctttgtcaacattcacactggatatttagtgtgat 626

                                                                       
Query: 427 agaa-cactgtttctgcagctttctgattgttcaaaagaactcaagattagaacagtagc 485
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 -gaaacactgtttctgcagctttctgattgttcaaaagaactcaagattagaacagtagc 685

                                                                       
Query: 486 caggtgtggtggcgcacacctttaatcccagcactc-ggaaagcagaggcaggcggattt 544
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 686 caggtgtggtggcgcacacctttaatcccagcactccggaa-gcagaggcaggcggattt 744

                                                                       
Query: 545 ctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatacaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatacaga 804

                                                    
Query: 605 gaaaccctgtctcgaanaatcaaaaaaaaagattagaacag 645
           |||||||||||||||| || |||||||||||||||||||||
Sbjct: 805 gaaaccctgtctcgaaaaagcaaaaaaaaagattagaacag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)