Query= MSMg01no079_e07.b1 MSMg01no079_e07.b1 CHROMAT_FILE:
MSMg01no079_e07.b1 PHD_FILE: MSMg01no079_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:51 2005
(656 letters)
>mm_chr19_16479224_16480279
Length = 1056
Score = 1239 bits (641), Expect = 0.0
Identities = 650/653 (99%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcactgtcaatcctcaaacgactttccctccccagaagagcattgggcttgt 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcactgtcaatcctcaaatgactttccctccccagaagagcattgggcttgt 264
Query: 65 attcttacagttgtttatttacattacaaacaccatttattcaactcatacgaacatgga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcttacagttgtttatttacattacaaacaccatttattcaactcatacgaacatgga 324
Query: 125 atctcagcacaaaatcagtatggcttcttttaaatattggcagtgttttcaagaaatcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctcagcacaaaatcagtatggcttcttttaaatattggcagtgttttcaagaaatcat 384
Query: 185 gccgacatggaaatattctggggaataaagaaagagacattaatgtgattggacctggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccgacatggaaatattctggggaataaagaaagagacattaatgtgattggacctggaa 444
Query: 245 ggattcagtatatgaaatacataaagaccatcaattaatgggcagaaagactaagatatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggattcagtatatgaaatacataaagaccatcaattaatgggcagaaagactaagatatc 504
Query: 305 aaatatatcaagctggagactggagagatggcaacagcatgtagcccccagtttttttt- 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatatatcaagctggagactggagagatggcaacagcatgtagcccccagttttttttt 564
Query: 364 gtttttgtttttgttttttttccttgaacagggtttcactatgtagccttggctggccaa 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtttttgtttttgttttttt-ccttgaacagggtttcactatgtagccttggctggccaa 623
Query: 424 aaccttactatgtagatcaagctggctccaaactcacacagatttccccctatctctgta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaccttactatgtagatcaagctggctccaaactcacacagatttccccctatctctgta 683
Query: 484 tcctcagtactgggaatagaaagatgtgcctggcccaacacgagactttctgtgactgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcctcagtactgggaatagaaagatgtgcctggcccaacacgagactttctgtgactgct 743
Query: 544 gttacagcttgttctctgtttaagttttaggaggacagtagcaaatacataccgaaagga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gttacagcttgttctctgtttaagttttaggaggacagtagcaaatacataccgaaagga 803
Query: 604 tcctgtttggttatctctctggttccattaaaaaggatctacccagggctggg 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcctgtttggttatctctctggttccattaaaaaggatctacccagggctggg 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_e07.g1 MSMg01no079_e07.g1 CHROMAT_FILE:
MSMg01no079_e07.g1 PHD_FILE: MSMg01no079_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:51 2005
(634 letters)
>mm_chr19_16574212_16575243
Length = 1032
Score = 963 bits (498), Expect = 0.0
Identities = 520/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 107 ggaactgaagcagaaactgtggagagctacttcttactggcttgttcctcacggctctct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ggaactgaagcagaaactgtggagagctacttcttactggcttgttcctcacggctctct 973
Query: 167 tagcttgctatttcgttagtcaatcaggaccatctgcccacagtggactgggcctttcca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 tagcttgctatttcgttagtcaatcaggaccatctgcccacagtggactgggcctttcca 913
Query: 227 catcaatcaatcactaattagtgatcactctgtcaatctctagacttgcctgttggccat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 catcaatcaatcactaattagtgatcactctgtcaatctctagacttgcctgttggccat 853
Query: 287 cgtatgaaggcattttctcacctccaaattggctttcatcagccatgagggaatttggct 346
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cgtatgaaggtattttctcacctccaaattggctttcatcagccatgagggaatttggct 793
Query: 347 agcaagttataaggaattgatgaagggtgcaggggcaacataaatgttctcaagaaataa 406
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 792 agcaagttataaggaattgatgaagggtgcaggggcaacataaatgtcctcaagaaataa 733
Query: 407 aagattaagggacagaaacaaagcactcagtctgcagggacgagttgtaaaatccactaa 466
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aagattaagggacagacacaaagcactcagtctgcagggacgagttgtaaaatccactaa 673
Query: 467 ccaaagagcaggatgagatgtgatccataaaaaaaaaagccagtctcccagtatgaccct 526
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 672 ccaaagagcaggatgagatgtgatccat--aaaaaaaagccagtctcccagtatgaccct 615
Query: 527 aagtcctgatcagttctgccttctggtagttcttgcttctgctcttccatgaagtacaat 586
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 614 aagtcctgatcagtcctgccttctggtagttcttgcttctgctcttccatgaagtaaaat 555
Query: 587 gtatacattaagatttttcaggagatcattgactctattgaaaaatta 634
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 554 gtatacattaagatttttcagtagatcattgactctattgaaaaatta 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1032
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1022
Effective search space: 637728
Effective search space used: 637728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
