BAC Information

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BAC

Clone NameMSMg01-079O19
Chromosome19 (Build37)
Map Location 59,275,658 - 59,462,543
singlet/doubletdoublet
Overlap geneKcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627
Downstream geneEmx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079O19.T7 (MSMg01no079_o19.b1)MSMg01-079O19.TJ (MSMg01no079_o19.g1)
ACCAG300890AG300891
length710705
length of high quality
(start - end)
240 (64 - 303)308 (73 - 380)
definitionCHROMAT_FILE: MSMg01no079_o19.b1 PHD_FILE: MSMg01no079_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:41 2005CHROMAT_FILE: MSMg01no079_o19.g1 PHD_FILE: MSMg01no079_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,275,658 - 59,275,897)(59,462,236 - 59,462,543)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATT
CAGTGAGGTGCCTAAATAAATTGTGAAGATTTGAAAACTGGGTTTCAGTT
ATTTCTTTTGAATTTTGAATTAGTTCTAAAAGACTGGAACCAGGGAAAGT
TTTTGCCCACCTTTTGCAGTGCTGGGAGGCCAAACTTAGGGCTTCATGTC
TCCTTGGCCACCATCTATTATTGAGAAATTGTCCTAGCCATGTGTGGTCA
GCTTTTTATCCCAAGTCCATGGTGTCTTTAGCATATTCAGAAGCCAAAGA
TGGTCAGAATGAAACATATTTACTTAGTTAGGACCCCAAGTTTCTCTAAG
GATACTCCTGTCTTGTGCGTGTGTGTGTGAGTGAGTGTGTGTGTGTGTGT
GTGTTTGCTTCGCCCCGTTCACCTCTGTATTTCTGCATTTAATATGTTAT
CCTTCACTACTACCTTCTCTGACGTATGTTTATATTTTTCTATCACATGT
TCTATGCTTTTCCGCCCCATCTACAGCATTTATGAATTTTCCTTGTTGTT
GCCTCTCCCCTGTTCTGAATGTTTCTTGCCCCCATATCACGTTATATTCT
CCCATTGTTTACACTTTTATCTTCCTCTTCTTTCGCTTTTCCCCCATGTT
TTTTTTTTTTCTTCTTACTGTTTGTACTTTATTTTTTAACTCTTCTTTCT
CATACCCAGT
AACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGCCTGAAAGGCAGAGAAAAGGGTCT
CTAACTGGCTACTTGCAAGCATGCAGAGCTCTTCAGCATGTACCTGTTCC
CTGAAACAGTCTGACTGGAAGGACCACACACACACATTCACATCAGTGCA
GTGGGCAATGGTGAGTTGTCGTCTAACTGACAAAGTGGAAGGCCCCACTT
TGTCCTCACCTGAGGTCCAGCATAATTCAAAAAGCACCTTCCAATCTTTG
TTTGTATCTATGAATCTTATACCTGTGGAAAGCATCGTCCTCCTTCCCAG
GGGCACAACCCCTGGGTCTGCCAATTTTAGTGTGGCCTGCAAGGTGTGGC
TGGTCTTCGCACTCTGAAGCCCACCACCACCTTCTGTGTGAAACTCTAGC
CACACGGTTGCTTCTGAGGTGCTGTTTCCTGCACCCATAGTTTTGCTCCT
CAAACACTTCCTATCCCTAGCTGTGTAGCCAGCTCCATCCTAACCTTTCA
AACCTTGTGCTCTAGGATGCTTTGTATTGCAAGATATAAATACTGGCTCA
GAGTTCTAGGTCAGCTTTCCAAAACAACAGTTTATGTCCTTTCCCTGAAT
TACAGTATAGTGTTGCTCATGAATTCTGTCTTTTCAGTGTAGTTCTTCTC
ATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_o19.b1 MSMg01no079_o19.b1 CHROMAT_FILE:
MSMg01no079_o19.b1 PHD_FILE: MSMg01no079_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:41 2005
         (240 letters)



>mm_chr19_59275458_59276097
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaattgtgaagatttgaaaactgggtttcagttatttcttttgaattttgaattag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataaattgtgaagatttgaaaactgggtttcagttatttcttttgaattttgaattag 260

                                                                       
Query: 61  ttctaaaagactggaaccagggaaagtttttgcccaccttttgcagtgctgggaggccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctaaaagactggaaccagggaaagtttttgcccaccttttgcagtgctgggaggccaa 320

                                                                       
Query: 121 acttagggcttcatgtctccttggccaccatctattattgagaaattgtcctagccatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttagggcttcatgtctccttggccaccatctattattgagaaattgtcctagccatgt 380

                                                                       
Query: 181 gtggtcagctttttatcccaagtccatggtgtctttagcatattcagaagccaaagatgg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gtggtcagctttttatcccaagtccatggtgcctttagcatattcagaagccaaagatgg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no079_o19.g1 MSMg01no079_o19.g1 CHROMAT_FILE:
MSMg01no079_o19.g1 PHD_FILE: MSMg01no079_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:41 2005
         (308 letters)



>mm_chr19_59462036_59462743
          Length = 708

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcctgaaaggcagagaaaagggtctctaactggctacttgcaagcatgcagagctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caggcctgaaaggcagagaaaagggtctctaactggctacttgcaagcatgcagagctct 449

                                                                       
Query: 61  tcagcatgtacctgttccctgaaacagtctgactggaaggaccacacacacacattcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcagcatgtacctgttccctgaaacagtctgactggaaggaccacacacacacattcaca 389

                                                                       
Query: 121 tcagtgcagtgggcaatggtgagttgtcgtctaactgacaaagtggaaggccccactttg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 388 tcagtgcagtgggcaatggtgagttgtcatctaactgacaaagtggaaggccccactttg 329

                                                                       
Query: 181 tcctcacctgaggtccagcataattcaaaaagcaccttccaatctttgtttgtatctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcctcacctgaggtccagcataattcaaaaagcaccttccaatctttgtttgtatctatg 269

                                                                       
Query: 241 aatcttatacctgtggaaagcatcgtcctccttcccaggggcacaacccctgggtctgcc 300
           || |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagcagagacctgtggaaagcatcgtcctccttcccaggggcacaacccctgggtctgcc 209

                   
Query: 301 aattttag 308
           ||||||||
Sbjct: 208 aattttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)