BAC Information

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BAC

Clone NameMSMg01-081O05
Chromosome19 (Build37)
Map Location 38,234,176 - 38,234,566
singlet/doubletsinglet
Overlap genePde6c
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4
Downstream gene5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O05.T7 (MSMg01no081_o05.b1)MSMg01-081O05.TJ (MSMg01no081_o05.g1)
ACCAG302386AG302387
length701687
length of high quality
(start - end)
250 (41 - 290)391 (70 - 460)
definitionCHROMAT_FILE: MSMg01no081_o05.b1 PHD_FILE: MSMg01no081_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:14 2005CHROMAT_FILE: MSMg01no081_o05.g1 PHD_FILE: MSMg01no081_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGAGGATCCGCGGAA
TTCCTTCTGTCCACCTGGCTGGGCCTCAAACCACAGAGATCCATCTTCCT
CTGCTTACTGAGTGCTGAGACTAGAGACATAGGCCACCACACCCTGCTAA
TTTATTTATCTTTTGTTTTGTTTTGTTTTTTGTGTTTTTTTTTGTTTTGT
TTTGTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTCCAGACAGCATTTCT
CTGTATAGCCTTGGCTGTCCTGGAACTCACTTTGTACACCAGGCTGTTCT
CTAACTCAAAAATCCATTTGCCTCTGCCTCCCGAGTGCTGGCATTATATG
TATGCGTCTCCTCCCTTGCCAATTTATCTTTGAGTCTTTTGGTCCTAAAC
ATACTTCTTTGCCCCTTGATGTGTTGTTTGAATGCCACCTTTTGCTCACT
ATACCATTCCCCTACCTTGTTCTCTCCCCCTTTTTACTCCCCCTATGCTG
TGGGTCACTTGTCCTTTGCTCCCCCCTTTCTTTTTTCTTTCTCCTCATTT
TTTCTTGTTTTACTGTTCCCCACTATTTTTTTTTTCCCTCTTTATTTTTA
TATACTTCTCTTTCGCTCTTCCAACTTTTCTTTTTTTTCTTCTCACCATT
CCACCCCCTCCACTTTATCCTTCTCTTTTTCCCTCCCCCCTTCTTCCCTC
G
TTATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACACCTCTATTGCTTTCCCATTTTAGAAGT
TTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAG
CTCCTGGCCATATTGGTAAGTGTTTCTTTGTTTCTTTCTGATCCTGGTGT
CTTTTTAAATAAAACCTATTTGGACACACTCTCATTTTTTTTCCAAGAAA
ATGTTGTTTCTTCTTCTTCCTCCTCCTCTCCCTCCCCCTCTCCCTCTTCT
AACCTTATCCAAGGCGGAAAAGAAAGAAGTCTTCCATAGACTGGCTGTCT
TAGTCAGGGTTTCTATTCCTGCACAAAATATCATGATCAAGAAGCAAATT
GGGTAGGAAAGGGTTTATTCAGCTTACATTTCTGCATTGCTGTTTATCAC
CAAAGGAAGTCAGGACTGGAACTCACACATGGAAGGAACCTGGAGTCAGG
AGCTGATGCATAGGTCATGGAGGGATGCTGCTTACTGGCCTGCTTCCCCT
GTTTTGCTCAGATTGGTTTCTTATACAACCCAGGACTACCAGCCCAGGGA
TGCCACCACCCATAATGCCCCTCCCCCTGGTCTTGATCACTATTTGAAAA
AATGCCCTACAGCTGGGTCCCATGGAGACATTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o05.g1 MSMg01no081_o05.g1 CHROMAT_FILE:
MSMg01no081_o05.g1 PHD_FILE: MSMg01no081_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:14 2005
         (391 letters)



>mm_chr19_38233976_38234766
          Length = 791

 Score =  748 bits (387), Expect = 0.0
 Identities = 390/391 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacctctattgctttcccattttagaagtttaaagagaagttaaatgtagaggtaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacctctattgctttcccattttagaagtttaaagagaagttaaatgtagaggtaatt 260

                                                                       
Query: 61  gaagagtgtgaagagagacagctcctggccatattggtaagtgtttctttgtttctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagtgtgaagagagacagctcctggccatattggtaagtgtttctttgtttctttct 320

                                                                       
Query: 121 gatcctggtgtctttttaaataaaacctatttggacacactctcattttttttccaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcctggtgtctttttaaataaaacctatttggacacactctcattttttttccaagaa 380

                                                                       
Query: 181 aatgttgtttcttcttcttcctcctcctctccctccccctctccctcttctaaccttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgttgtttcttcttcttcctcctcctctccctccccctctccctcttctaaccttatc 440

                                                                       
Query: 241 caaggcggaaaagaaagaagtcttccatagactggctgtcttagtcagggtttctattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggcggaaaagaaagaagtcttccatagactggctgtcttagtcagggtttctattcc 500

                                                                       
Query: 301 tgcacaaaatatcatgatcaagaagcaaattgggtaggaaagggtttattcagcttacat 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tgcacaaaatatcatgatcaagaagcaaattggggaggaaagggtttattcagcttacat 560

                                          
Query: 361 ttctgcattgctgtttatcaccaaaggaagt 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 ttctgcattgctgtttatcaccaaaggaagt 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)