Query= MSMg01no082_n16.b1 MSMg01no082_n16.b1 CHROMAT_FILE:
MSMg01no082_n16.b1 PHD_FILE: MSMg01no082_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:26 2005
(240 letters)
>mm_chr19_19927343_19927989
Length = 647
Score = 398 bits (206), Expect = e-115
Identities = 231/242 (95%), Gaps = 7/242 (2%)
Strand = Plus / Plus
Query: 6 gaattcttttg-caaagatgtcttc-ctgaaactgcactgatc-----atgtttatactt 58
||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 206 gaattcttttgtcaaagatgtcttcactggaactgcactgatcagacaatgtttatactt 265
Query: 59 tctaaatttattttatttaagataaagtgaaaatgtacaatatctggaacactatgaact 118
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tctaaatttactttatttaagataaagtgaaaatgtacaatatctggaacactatgaact 325
Query: 119 cttcaaattttattttaatactttaaatgatataatatttaattatagaattattaaacc 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttcaaatcttattttaatactttaaatgatataatatttaattatagaattattaaacc 385
Query: 179 aaaaatataagtaaactgactataataacaactgcaccctgttttctcaccaaccattca 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaaaatataaataaactgactataataacaactgcaccctgttttctcaccaaccattca 445
Query: 239 gt 240
||
Sbjct: 446 gt 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 647
Length adjustment: 9
Effective length of query: 231
Effective length of database: 638
Effective search space: 147378
Effective search space used: 147378
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no082_n16.g1 MSMg01no082_n16.g1 CHROMAT_FILE:
MSMg01no082_n16.g1 PHD_FILE: MSMg01no082_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:26 2005
(603 letters)
>mm_chr19_20089162_20090163
Length = 1002
Score = 874 bits (452), Expect = 0.0
Identities = 570/628 (90%), Gaps = 36/628 (5%)
Strand = Plus / Minus
Query: 2 aaactaaggacatgagcttctaccttagctggacatagtgatgtcagagttggcaggatg 61
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct: 970 aaactaaggacatgag------ccttagatggacatagtaatgtcagagttggcaggatg 917
Query: 62 tctcatgtgtcagaacaatc--------aggtagcaaacacgagatgaaagtaacaacac 113
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 916 tctcatgtgtcagaacaatcatcgggttaggtagcaaacacgagatgaaagtaacaacac 857
Query: 114 aa---atactcgcagaagagtcaaaagagctgttatgcata--------------atata 156
|| |||| ||||||||| ||||||| |||||| |||||| |||||
Sbjct: 856 aaatgatacacgcagaagaatcaaaagggctgttttgcataaaatcccttttatgatata 797
Query: 157 gaactaaaatggcagataaagatcatgccacaggatctagaataacaaatggtgtcatgg 216
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaactaaaatggaacataaagatcatgccacaggatctagaataacaaatggtgtcatgg 737
Query: 217 attgttcattatatactaggttccatgtgtactttttgctgtattg-tttattatttcat 275
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 736 attgttcattatatactaggttccatgtgtactttttgctgtattgatttattacttcat 677
Query: 276 aaatcatagtttaggtaaatatataataagtttgataaagattatctactactagagagt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaatcatagtttaggtaaatatataataagtttgataaagattatctactactagagagt 617
Query: 336 agcatacagggttgatacattaataaacatagattatccttaagaaatctaagtctagta 395
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 616 agcatacagggttgatacattaataaacataaattatccttaagaattctaagtctagta 557
Query: 396 ttcaatggaaagaata-catatcctaataaaatttccatgctcactgacaattatttagg 454
| ||||||||| |||| ||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 556 tccaatggaaaaaataccatatcctaataaaatttccatgtttattgacaattatttagt 497
Query: 455 attttgtgatagcttatattgatggcctgttatcaagtgtttattgctttgtagtcttaa 514
|||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct: 496 attttgtgatagcttatattgacggcctgttatcaaatgtttattgctttgtacccttaa 437
Query: 515 gtatcagatttttaaaagtattatattcaataaaagctcttcatgcccattgaaatttat 574
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtatcagattttttaaagtattatattcaataaaagctcttcatgcccattgaaatttat 377
Query: 575 gagtactttttctttaaaacctaccata 602
||||| ||||| |||||||||||||||
Sbjct: 376 gagta-ttttt--ttaaaacctaccata 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1002
Length adjustment: 10
Effective length of query: 593
Effective length of database: 992
Effective search space: 588256
Effective search space used: 588256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
