Query= MSMg01no083_n03.b1 MSMg01no083_n03.b1 CHROMAT_FILE:
MSMg01no083_n03.b1 PHD_FILE: MSMg01no083_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:39 2005
(512 letters)
>mm_chr19_60384371_60385283
Length = 913
Score = 946 bits (489), Expect = 0.0
Identities = 504/509 (99%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 5 ggaattcatttgacccacaa-tgacaattagcctggtctccccgttctgcgtcaggatgc 63
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcatttgacaaacaaatgacaattagcctggtctccccgttctgcgtcaggatgc 264
Query: 64 tttttgattgaacctagaccaatttaccatttttaaatgagtttagacatttacatttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttgattgaacctagaccaatttaccatttttaaatgagtttagacatttacatttaa 324
Query: 124 aatgtctagaggaaattagcccagggacatccaacagccaacatgctttttgaagttgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtctagaggaaattagcccagggacatccaacagccaacatgctttttgaagttgat 384
Query: 184 tactatttgatctagtaccctctacctgtgcattttgttccgacttcaaagtttgggaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactatttgatctagtaccctctacctgtgcattttgttccgacttcaaagtttgggaat 444
Query: 244 gtaaatgtcacctcacctcaaagcacggggagaaacttaaaagcagcttggctcattatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaaatgtcacctcacctcaaagcacggggagaaacttaaaagcagcttggctcattatg 504
Query: 304 gtatgcaaaggagcccatattttaatattcgtttaatatggttagttagctttaataaca 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 gtatgcaaaggagcccatattttaatattcgtttaatatggttagttagctttaatgaca 564
Query: 364 ccggtgtgccactgtcatagttttggggtccaaaagcactgattgaagtttctagctgct 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccggtgtggcactgtcatagttttggggtccaaaagcactgattgaagtttctagctgct 624
Query: 424 acttctatttttctgcacagaacagaattgtgcctttgaaggatagattggaacttggct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acttctatttttctgcacagaacagaattgtgcctttgaaggatagattggaacttggct 684
Query: 484 ggatcctttctggtgagagctcatgatag 512
|||||||||||||||||||||||||||||
Sbjct: 685 ggatcctttctggtgagagctcatgatag 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space: 453306
Effective search space used: 453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_n03.g1 MSMg01no083_n03.g1 CHROMAT_FILE:
MSMg01no083_n03.g1 PHD_FILE: MSMg01no083_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:40 2005
(498 letters)
>mm_chr19_60540953_60541850
Length = 898
Score = 948 bits (490), Expect = 0.0
Identities = 496/498 (99%)
Strand = Plus / Minus
Query: 1 tgttaatgaggaacgtacttggggcctcagtttccaagagcctcaataatggatgctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgttaatgaggaacgtacttggggcctcagtttccaagagcctcaataatggatgctgaa 639
Query: 61 acagctactggtttgctgagagaaggaactttggaaaaagatacatagtatcaacccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acagctactggtttgctgagagaaggaactttggaaaaagatacatagtatcaacccagg 579
Query: 121 gcctgtgaagtgtgtgatgtgaattactgtctgtagcaagtgtgtggggctctagtgcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gcctgtgaagtgtgtgatgtgaattactgtctgtagcaagtgtgtggggctctagtgcca 519
Query: 181 ctccaggaaggtctcccctctcttctattactgttgaaaagagactagctcatttatccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctccaggaaggtctcccctctcttctattactgttgaaaagagactagctcatttatccg 459
Query: 241 cgtgctgtataagaggaggtttggtaccaaaatgacaaaggtttagttctcacatctaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cgtgctgtataagaggaggtttggtaccaaaatgacaaaggtttagttctcacatctaca 399
Query: 301 gacgatgggggtatgaatatctgcactaagcagcaccagaagtcgttagtagctacaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gacgatgggggtatgaatatctgcactaagcagcaccagaagtcgttagtagctacaggg 339
Query: 361 ttacattccgtagactgaaaagggttgaagcaggttaagatgggagatagtaactacctc 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 338 ttacattccgtagactgaaaagggttgaagcaggttaagatgggagatggtaactacctc 279
Query: 421 tggtggtagcacctaattgactttgagcttcatctagagactggagcatgtagaacctat 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 278 tggtggtagcacctaattgactttgagcttcatctagagactggagcatggagaacctat 219
Query: 481 accctaatgatgcagccc 498
||||||||||||||||||
Sbjct: 218 accctaatgatgcagccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
