AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATGACAGACCAAAGTACAGATACCACCAAAGTCCAATTTGAACAAT
CAGTGAGTTTTATTGGGGTTACTTACAGAAGTATTGGTGAGGGGTTACTT
ACAGGAGCAGAAAGGACTCAAAGACAGCTGCATCACCAAGGCCCATTCCA
GCATGGGTAACAGCTCACAAAAGCTGGGAACCTGGGGGCACACTGTATAG
CCTGAAGACAGCTCAACAGTTTGGAGACTGTCCTTTCCAAGTGACTCTGG
TCTAAACCTCTCTGAGGGAGCTTGGTTTGTACTGCATCTTCCAGGCAATT
GGTTTTGTCACAGAGTCTACTTCAAAGCTCAGTTTCCTTCTGTCTGAGAG
GGCATGCTCAGCCCCCATTGCCTAATCTGGTATGGAGGGGCCTAGCGAAT
CCAGTTAGTTGCAGGGACTTCCTGAACTTATTTTGAGCCGTTTACTCTAT
CGCCTCGAGAAACTGCATGCAGGAGACAAAGCTTCGCCCTTATTAAGAAA
CTAGGAGAAGGTAGAGTCAGGCCACATACGTACCGTATTACAGGCTCGAC
GTGTTTTCAGTATAGCATTTCTATTTTCACGTGACGGGTGCGTGGCACCC
CGTGCGTCTTTGGGGGGTGGGTTTGCCTTGTCGCCAGCGTAGCACTAGGC
GCTGGCGGCAACAGCCG

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCCAGCTGGGATGACGTGGCAACCCT
ATCAAAACAAAACAAAACACCAGCAAAAAAATTAGTTGAATGATTTGGAA
GACTAAATAAGTCACTTTAGAAACAAACAATAAAATAAAATAAAATAAAT
AATAAAAAAAAACAGCCCTTGGGACTATTCACCCCCAAAAAATCTGAAGA
CATGCTAAATTTTCTCGTCTTTCTTTAAAGATTTGAAGCTATAAATTATA
GGCGAGGTAGTATGAAGGTGACTTCCAAGAACTGTCTAATCAATACACCA
ATGGCTAAAAAGTCAGGGGCAGCTGGACACCACAGTAAGAACCTGGTACA
AGTACACAGATATTTATACGTGTCAAAATAAAATGGTTGTGACATATAAT
AATTAAACAAGATTACACTCCCCATTTGACATTTTCTGAGTGGCCAAAAA
CCCTTAAATCAACAATTTAATCTGAAAACTCCTAAACTGTTAGCATCCTT
GGGAAATGCCCAGAGGTTTTAAGAAAAGTCCCTCTTTTTCATCAGCCTTA
ATACCCATAAATCCCAAGAAAAACATCAACTTACAGTACAAATATAGCTT
AATTGCCCAAAAATGAAGACACCATGAGCAAGTACTGGACAAAACTGAAG
TTACT

Query= MSMg01no083_n05.g1 MSMg01no083_n05.g1 CHROMAT_FILE:
MSMg01no083_n05.g1 PHD_FILE: MSMg01no083_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:40 2005
         (610 letters)



>mm_chr19_42652373_42653382
          Length = 1010

 Score = 1120 bits (579), Expect = 0.0
 Identities = 604/615 (98%), Gaps = 5/615 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagctgggatgacgtggcaaccctatcaaaacaaaacaaaacaccagcaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aaggccagctgggatgacgtggcaaccctatcaaaacaaaacaaaacaccagcaaaaaaa 884

                                                                       
Query: 61  ttagttgaatgatttggaagactaaataagtcactttagaaacaaac-----aataaaat 115
           |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||
Sbjct: 883 ttagttgaatgatttggaagactaaataagtcactttagaaacaaacaataaaataaaat 824

                                                                       
Query: 116 aaaataaaataaataataaaaaaaaacagcccttgggactattcacccccaaaaaatctg 175
           ||||||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||||
Sbjct: 823 aaaataaaataaataattaaaaaaaacagccctcgggactattcacccaaaaaaaatctg 764

                                                                       
Query: 176 aagacatgctaaattttctcgtctttctttaaagatttgaagctataaattataggcgag 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aagacatgctaaattttctcgtctttctttaaagatttgaagctataaattataggcgag 704

                                                                       
Query: 236 gtagtatgaaggtgacttccaagaactgtctaatcaatacaccaatggctaaaaagtcag 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gtagtatgaaggtgacttccaagaactgtctaatcaatacaccaatggctaaaaagtcag 644

                                                                       
Query: 296 gggcagctggacaccacagtaagaacctggtacaagtacacagatatttatacgtgtcaa 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 643 gggcagctggacaccacagtaagaacctggtacaagtacacagatatttatatgtgtcaa 584

                                                                       
Query: 356 aataaaatggttgtgacatataataattaaacaagattacactccccatttgacattttc 415
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 583 aataaaatggttgtgacatataataattaaacaagattacactccccgtttgacattttc 524

                                                                       
Query: 416 tgagtggccaaaaacccttaaatcaacaatttaatctgaaaactcctaaactgttagcat 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgagtggccaaaaacccttaaatcaacaatttaatctgaaaactcctaaactgttagcat 464

                                                                       
Query: 476 ccttgggaaatgcccagaggttttaagaaaagtccctctttttcatcagccttaataccc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccttgggaaatgcccagaggttttaagaaaagtccctctttttcatcagccttaataccc 404

                                                                       
Query: 536 ataaatcccaagaaaaacatcaacttacagtacaaatatagcttaattgcccaaaaatga 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ataaatcccaagaaaaacatcaacttacagtacaaatatagcttaattgcccaaaaatga 344

                          
Query: 596 agacaccatgagcaa 610
           |||||||||||||||
Sbjct: 343 agacaccatgagcaa 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)