BAC Information

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BAC

Clone NameMSMg01-084B05
Chromosome19 (Build37)
Map Location 46,225,358 - 46,336,365
singlet/doubletdoublet
Overlap geneGbf1, LOC668094
Upstream geneTlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3
Downstream geneNfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084B05.T7 (MSMg01no084_b05.b1)MSMg01-084B05.TJ (MSMg01no084_b05.g1)
ACCAG304030AG304031
length675702
length of high quality
(start - end)
106 (76 - 181)177 (72 - 248)
definitionCHROMAT_FILE: MSMg01no084_b05.b1 PHD_FILE: MSMg01no084_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:00 2005CHROMAT_FILE: MSMg01no084_b05.g1 PHD_FILE: MSMg01no084_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,225,358 - 46,225,463)(46,336,189 - 46,336,365)
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGGCAGTCCCCGCAGCCAGGGCTGTTACCCAGAGAAACTC
TGTTTTGAAAAACAAACAAACAAAAGATTTATTTTTTATTATTTGAAATG
TATGTGTCTGTGCCTGGCATAGTGGTGCAGCATTTGGGAGGCAGTGGCAG
GTACATCTCTGTGAGGTTGAAGCCAGTCTGTGTTTCAAGGACAGTCAGTA
ACCTGGCGTAACAGAAAGATCTTTTTTTTTTTGCCCCCCCCCTTCCTTTT
TTTTTCTTTCCTTATAATTTCTCTTCTTTTCCCCCCAATTTTCTTATTTC
TCCTATTTTAGCCCCCCTCCCTCCTATTGCGGATTAATTTTGTTCCCCCA
ACCGGTGGTGGAAATAACCCCCCCGTTGGCCCATCTTTCTTTCACGTTTC
TTTTCCTTCGTTTAAAAAACGGCGGTCCCCGCGTTTACCTCCTTCCCTTG
GTTTCCTGTTCCGTGACCCCCTATCCTTTCCCTTTCTGTCCCTTTCTTTT
CTTGCTGTAACTCCAATTTTTTTTTTCTCTTTACTCCCCCCTTTTTTGTG
CAGTAGCCTCTGTAACCTCCTCTCCCCTGTCCGACTGTTTTCTCTATCGC
TCTCCCCCCGTTCCCTCTCTTGTCC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGTGGCTTCTCAATCTCAAAAAACAACC
AAGTCTAGTCTTACCTGGAATAAGTGTCGGCACATCTCATCCTTAATGAG
ACCCAAGAGGGTCTGGCACTGGGCCACAGGCGCTGACTCAAGAGCCACTG
TCAGCAAATGCAGTCCCATGTGGATCATCACCTCAGAGTTATGGCGGTCG
TGTGGATTTGTGAGGGAGATAAGGAAGCGGAAGAGCTCACGGATGCAAGG
AAGACCATAAGGAACCAAAGCTGTGCCTGAAAAGGTGGGAAGACATACCC
CAGCTGTTTGATACCACATAGGTCTGTGTTGACTATGCCAAAAACTTGTT
TGTTGTGATTGTGCGCTATATGTGTTTGGTGCATGCATGTGTAGGTGTGG
CATGGTGTACAAATGTATGTGCCCGACCGTGCGCACATGTAAGACACGAA
GGATGTCAAATGTCTTCCTCATATCGCCCTGCTTTATTGCCTTTAACAGG
TCTCTCACTGATTTGGAAACTTCATTGTATCAGCAAACTCTCCCGACTCA
CATGTCTGAAAACCCCCAAAATGAGATTACAGGCACCTGCAGTCGTGCTT
GACTCTTTACATGGGCACAAGCGATTTGAGTTCCGGCCCTCCACTTTGTT
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_b05.b1 MSMg01no084_b05.b1 CHROMAT_FILE:
MSMg01no084_b05.b1 PHD_FILE: MSMg01no084_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:00 2005
         (106 letters)



>mm_chr19_46225158_46225663
          Length = 506

 Score =  205 bits (106), Expect = 6e-58
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagggctgttacccagagaaactctgttttgaaaaacaaacaaacaaaagatttatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagggctgttacccagagaaactctgttttgaaaaacaaacaaacaaaagatttatttt 260

                                                         
Query: 61  ttattatttgaaatgtatgtgtctgtgcctggcatagtggtgcagc 106
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattatttgaaatgtatgtgtctgtgcctggcatagtggtgcagc 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no084_b05.g1 MSMg01no084_b05.g1 CHROMAT_FILE:
MSMg01no084_b05.g1 PHD_FILE: MSMg01no084_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:00 2005
         (177 letters)



>mm_chr19_46335989_46336565
          Length = 577

 Score =  342 bits (177), Expect = 6e-99
 Identities = 177/177 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtggcttctcaatctcaaaaaacaaccaagtctagtcttacctggaataagtgtcggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tggtggcttctcaatctcaaaaaacaaccaagtctagtcttacctggaataagtgtcggc 318

                                                                       
Query: 61  acatctcatccttaatgagacccaagagggtctggcactgggccacaggcgctgactcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acatctcatccttaatgagacccaagagggtctggcactgggccacaggcgctgactcaa 258

                                                                    
Query: 121 gagccactgtcagcaaatgcagtcccatgtggatcatcacctcagagttatggcggt 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagccactgtcagcaaatgcagtcccatgtggatcatcacctcagagttatggcggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)