BAC Information

Click to search

BAC

Clone NameMSMg01-086D13
Chromosome19 (Build37)
Map Location 14,514,789 - 14,515,068
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433
Downstream geneTle4, EG433225, EG635497, Pomc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086D13.T7 (MSMg01no086_d13.b1)MSMg01-086D13.TJ (MSMg01no086_d13.g1)
ACCAG305594AG305595
length683775
length of high quality
(start - end)
283 (51 - 333)279 (131 - 409)
definitionCHROMAT_FILE: MSMg01no086_d13.b1 PHD_FILE: MSMg01no086_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:53 2005CHROMAT_FILE: MSMg01no086_d13.g1 PHD_FILE: MSMg01no086_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCAGTTCCAGAGGATCCGCGGAATTCTCACCTTACCCAAACCGAAGTG
GAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGAAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTATTGGTGGA
TCCAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCACCCGGCC
CCAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTCATAATATCC
AGAAGCTGGAATGAACCCAGATGCCCCTCAACATAGGACTGGATACCGAA
CACGTGGCACATCTACTCAATGGAGTACTACTCATCTACTACTAAGAATG
AATTTATGAAACTCCTATCCTCATGGATGCGTCTGTATAGCATCTTCCTG
ATTGAGGCAACACATTCCCTACTGAACTCCCACTTTATGCTTTCCCCGAT
AACCGCATATCCACCTTTCAACCTTCGATTTCCAACATATTAATGTTTTT
TCTGCTATACCTTTGTACCCTCTTTATTACCCG
NTTTTTTTTTTNNNTTTTTTTCCTTTTCCTTTCTCCCTCTTTNNCCTTTT
TCNNNNCCTCTATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATACACAATTTCAAGG
AAGATTTTTTTTTCTCCTATATACCACGGGAAAAGTGGTTTCACTGTAAA
AAGGAATGAGTATTAGAGTTTTTCAGGACTATGGATGAGAGTTAAAATGG
GTAAAATTCTGCAAAACTTTTTGGAGGGTGTTCCAGTCTCAAGAATTTGC
ATGAGCTTTGATGGGACAATACGGTTTTTCTTTGTCTTGATGTGTTTGAG
GGTATGGTCAAAGGTGGAGTTTTTGCTTGTTTGTTTGTTTGCTTGCTTGC
TTGCTTGCTTGCTTGTTTTATTTCGCCCGCTTCCTCGAGACAGGTTATTC
GAGACAGGTCTATGCAGTCCTGGCTATCCTATAATTCAAAGAGTTCCTCC
TGGTTCTTCCTCTGGATGCTAGAATCATAGGTGCGTGCCACCATATTCAC
CATAGACTTTTTAGGACAAATAACTATTTCGCGATTCAACAAAAATTGTA
TCCTACCTTCCAAATATCATCAGTTAACTGGCCTGATATTGCCCTAGTTC
CCAGAACTTTAGCTGATAAATTTGCTATAATACAACTTGTTGTGTATGTG
ACTTACTGATACTTAGGACTCGTAATAATTACTCAATTTCCACCCCTTTT
TCCCCTATCCCCTTGCTCCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_d13.g1 MSMg01no086_d13.g1 CHROMAT_FILE:
MSMg01no086_d13.g1 PHD_FILE: MSMg01no086_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:53 2005
         (279 letters)



>mm_chr19_14514626_14515305
          Length = 680

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcatacacaatttcaaggaaga-tttttttttctcctatataccacgggaaaagtggt 59
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 443 tttcatacacaatttcaaggaagattttttttttctcctatataccaggggaaaagtggt 384

                                                                       
Query: 60  ttcactgtaaaaaggaatgagtattagagtttttcaggactatggatgagagttaaaatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcactgtaaaaaggaatgagtattagagtttttcaggactatggatgagagttaaaatg 324

                                                                       
Query: 120 ggtaaaattctgcaaaactttttggagggtgttccagtctcaagaatttgcatgagcttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtaaaattctgcaaaactttttggagggtgttccagtctcaagaatttgcatgagcttt 264

                                                                       
Query: 180 gatgggacaatacggtttttctttgtcttgatgtgtttgagggtatggtcaaaggtggag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gatgggacaatacggtttttctttgtcttgatgtgtttgagggtatggtcaaaggtggag 204

                                                   
Query: 240 tttttgcttgtttgtttgtttgcttgcttgcttgcttgct 279
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttttgcttgtttgtttgtttgcttgcttgcttgcttgct 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space:   181170
Effective search space used:   181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)