BAC Information

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BAC

Clone NameMSMg01-088E21
Chromosome19 (Build37)
Map Location 59,275,646 - 59,421,184
singlet/doubletdoublet
Overlap geneKcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627
Downstream geneEmx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088E21.T7 (MSMg01no088_e21.b1)MSMg01-088E21.TJ (MSMg01no088_e21.g1)
ACCAG307098AG307099
length689664
length of high quality
(start - end)
189 (125 - 313)333 (56 - 388)
definitionCHROMAT_FILE: MSMg01no088_e21.b1 PHD_FILE: MSMg01no088_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:44 2005CHROMAT_FILE: MSMg01no088_e21.g1 PHD_FILE: MSMg01no088_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,420,999 - 59,421,184)(59,275,646 - 59,275,978)
sequence
CTCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAA
ACAAACAAACAACCCTTTCCCCCAAAACTCCAGCATCCTCCGTGTTATTA
TGCCAAGTAGAAACCAAGGACTTAGGATCCCACGATGTGACCCCTAAGCA
ATTTCTTTACTATGCCACGGGTACCACGGGTTATTCTGTGAAATTGGTAG
GCACTAAAAGTAATGGCCTGAGGGATGGACTCCGGATAATGCCCTCAGAG
AGGAAAGAAGGGAGGATTTTTTCGTGAACAATCTGAATGGAGTTGCTAAG
ACATTTTTTTTTATGCCCCCCCCCCCCCTCAGCTCACCCATTCCTCCCGG
ACCTCATATAATCCCCCAACAAAATAAAATTGTAATCCCCCAGGGTGGTG
AAGTGAGTCCGCTTTTGCTGTGTTGCGTGTGGTGCACTTCTCTTTATGTA
TGCTGATTGTATGCTGCAGCTGTGTCCGTGCTTTTGTGTTTTGTCGCGTG
TGTGCTGTTGGCATTGTTGTTTGTGTTGCTGTTCTGTTGTGTGTGTGTTT
GTTTGTTGTCTGGTTTGCATTGTTTTTACTGTGTGTCTTGTTTGTGTGGG
TGGTATTGGTTGTGCCTTTGTGGTGGTTGGATTGTGGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGTGAGGTGTTTAAATAAATTGTGAAGATTTGAAAACTGGTTTTC
ACTTATTTCTTTTGAATTTTGAATTAGTTCTAAAAGACTGGAACCAGGGA
AAGTTTTTGCCCACCTTTTGCAGTGCTGGGAGGCCAAACTTAGGGCTTCA
TGTCTCCTTGGCCACCATCTATTATTGAGAAATTGTCCTAGCCATGTGTG
GTCAGCTTTTTATCCCAAGTCCATGGTGCCTTTAGCATATTCAGAAGCCT
AAGATGGCCAGAATGAAACAAAGTTACTTAGTTAGGACCCCTAGTTTCTC
TAAGGATACTCCTGGCTTGTGCGTGTGTGTGTGTGTGTGTGTGTGCCCCT
GAGTGTACATGCTTGTCAAGGGTCAGGTCTGTATTTCTGCCTCCAACATG
GTATCCAGTATAGGACCCTGGGCTGACGGATGTTGACCTCGTTGGATCAC
ATGCTCTATGCACGGACGCTCCATCTATCGAACCTATGACTTTCACTTGT
CTTGTCTCTCACCTGCTTTGACTGGCTCATGTTCCCATTTCTCGCTATTA
CTCGATATTGTCCAGACTTCAATTTTCCTGGCGTTTTGTTCTTCCCCCCT
GGTTCTCTGGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_e21.b1 MSMg01no088_e21.b1 CHROMAT_FILE:
MSMg01no088_e21.b1 PHD_FILE: MSMg01no088_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:44 2005
         (189 letters)



>mm_chr19_59420796_59421384
          Length = 589

 Score =  360 bits (186), Expect = e-104
 Identities = 186/186 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctccagcatcctccgtgttattatgccaagtagaaaccaaggacttaggatcccacgatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctccagcatcctccgtgttattatgccaagtagaaaccaaggacttaggatcccacgatg 330

                                                                       
Query: 64  tgacccctaagcaatttctttactatgccacgggtaccacgggttattctgtgaaattgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgacccctaagcaatttctttactatgccacgggtaccacgggttattctgtgaaattgg 270

                                                                       
Query: 124 taggcactaaaagtaatggcctgagggatggactccggataatgccctcagagaggaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taggcactaaaagtaatggcctgagggatggactccggataatgccctcagagaggaaag 210

                 
Query: 184 aaggga 189
           ||||||
Sbjct: 209 aaggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no088_e21.g1 MSMg01no088_e21.g1 CHROMAT_FILE:
MSMg01no088_e21.g1 PHD_FILE: MSMg01no088_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:44 2005
         (333 letters)



>mm_chr19_59275446_59276178
          Length = 733

 Score =  613 bits (317), Expect = e-180
 Identities = 329/333 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaggtgtttaaataaattgtgaagatttgaaaactggttttcacttatttcttttga 60
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 201 agtgaggtgtttaaataaattgtgaagatttgaaaactgggtttcagttatttcttttga 260

                                                                       
Query: 61  attttgaattagttctaaaagactggaaccagggaaagtttttgcccaccttttgcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttgaattagttctaaaagactggaaccagggaaagtttttgcccaccttttgcagtg 320

                                                                       
Query: 121 ctgggaggccaaacttagggcttcatgtctccttggccaccatctattattgagaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggaggccaaacttagggcttcatgtctccttggccaccatctattattgagaaattg 380

                                                                       
Query: 181 tcctagccatgtgtggtcagctttttatcccaagtccatggtgcctttagcatattcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctagccatgtgtggtcagctttttatcccaagtccatggtgcctttagcatattcaga 440

                                                                       
Query: 241 agcctaagatggccagaatgaaacaaagttacttagttaggacccctagtttctctaagg 300
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 agccaaagatggccagaatgaaacaaagttacttagttaggaccccaagtttctctaagg 500

                                            
Query: 301 atactcctggcttgtgcgtgtgtgtgtgtgtgt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 atactcctggcttgtgcgtgtgtgtgtgtgtgt 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)